miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16422 3' -54.8 NC_004084.1 + 1020 0.66 0.759459
Target:  5'- gGCGACGUCgacgcgaUCGGggGCGcgCUcgaguucGCCGAGg -3'
miRNA:   3'- gCGCUGCAG-------AGCC--UGCuaGA-------CGGUUC- -5'
16422 3' -54.8 NC_004084.1 + 3332 0.7 0.516027
Target:  5'- gCGCG-CGUCUCGGACGGgggaggagcgCgccgGCCAc- -3'
miRNA:   3'- -GCGCuGCAGAGCCUGCUa---------Ga---CGGUuc -5'
16422 3' -54.8 NC_004084.1 + 5277 0.71 0.505677
Target:  5'- uCGaCGACGUCccgcagCGGAUGGUCcGCCAu- -3'
miRNA:   3'- -GC-GCUGCAGa-----GCCUGCUAGaCGGUuc -5'
16422 3' -54.8 NC_004084.1 + 5354 0.66 0.761485
Target:  5'- gGCGGCGaggaCUgGGACGAUCUcgacGUCGAa -3'
miRNA:   3'- gCGCUGCa---GAgCCUGCUAGA----CGGUUc -5'
16422 3' -54.8 NC_004084.1 + 8240 0.7 0.547558
Target:  5'- gGCGACGUCga-GACGAUCgacGCCGc- -3'
miRNA:   3'- gCGCUGCAGagcCUGCUAGa--CGGUuc -5'
16422 3' -54.8 NC_004084.1 + 8321 0.69 0.590472
Target:  5'- aGaCGGCGUCggcgCGGAUGAUCcaGCCGGc -3'
miRNA:   3'- gC-GCUGCAGa---GCCUGCUAGa-CGGUUc -5'
16422 3' -54.8 NC_004084.1 + 9313 0.69 0.594801
Target:  5'- uCGUGACGcUCUCGGAagaacuccgggugcuUGAUCccGCCGGGc -3'
miRNA:   3'- -GCGCUGC-AGAGCCU---------------GCUAGa-CGGUUC- -5'
16422 3' -54.8 NC_004084.1 + 9615 0.68 0.677352
Target:  5'- uGCG-CGUCuUCGaGCGAUCaacGCCGAGg -3'
miRNA:   3'- gCGCuGCAG-AGCcUGCUAGa--CGGUUC- -5'
16422 3' -54.8 NC_004084.1 + 10189 0.68 0.665449
Target:  5'- aCGCGGCGggagacuUCUCaGGCGAUC-GCCuGGa -3'
miRNA:   3'- -GCGCUGC-------AGAGcCUGCUAGaCGGuUC- -5'
16422 3' -54.8 NC_004084.1 + 13988 0.66 0.790231
Target:  5'- aCGCGGCcgugcucGUCcguUCGGaACGggUUGCCGAGc -3'
miRNA:   3'- -GCGCUG-------CAG---AGCC-UGCuaGACGGUUC- -5'
16422 3' -54.8 NC_004084.1 + 14578 0.66 0.781443
Target:  5'- aGCGGCGUCgCGGAUG-UCUcgcGCCc-- -3'
miRNA:   3'- gCGCUGCAGaGCCUGCuAGA---CGGuuc -5'
16422 3' -54.8 NC_004084.1 + 16557 0.73 0.389808
Target:  5'- aCGCGGC-UCUCGGGcCGAUCggUGCCGc- -3'
miRNA:   3'- -GCGCUGcAGAGCCU-GCUAG--ACGGUuc -5'
16422 3' -54.8 NC_004084.1 + 18090 0.67 0.741008
Target:  5'- uCGagGACGaUCUCGGACG-UCagGUCGAGg -3'
miRNA:   3'- -GCg-CUGC-AGAGCCUGCuAGa-CGGUUC- -5'
16422 3' -54.8 NC_004084.1 + 18563 0.66 0.7912
Target:  5'- gGcCGACGgggagaUCGcGACGGUCUGCUucGg -3'
miRNA:   3'- gC-GCUGCag----AGC-CUGCUAGACGGuuC- -5'
16422 3' -54.8 NC_004084.1 + 21599 0.69 0.579672
Target:  5'- gGCGAgcagcuggacCGUCUCgGGACGAUCUucgacuuggaccGCCAGc -3'
miRNA:   3'- gCGCU----------GCAGAG-CCUGCUAGA------------CGGUUc -5'
16422 3' -54.8 NC_004084.1 + 21730 0.67 0.709515
Target:  5'- cCGCGACGUCaUCgcaguccuccuGGAcauCGAUgCUGCCGAu -3'
miRNA:   3'- -GCGCUGCAG-AG-----------CCU---GCUA-GACGGUUc -5'
16422 3' -54.8 NC_004084.1 + 21946 0.74 0.33875
Target:  5'- uGuCGGCGUC-CGGACGAcgUCUccGCCGAGa -3'
miRNA:   3'- gC-GCUGCAGaGCCUGCU--AGA--CGGUUC- -5'
16422 3' -54.8 NC_004084.1 + 23571 0.66 0.751306
Target:  5'- aGCGauGCGUCUCGuacGACGAcgucgugcUCcGCCGGGa -3'
miRNA:   3'- gCGC--UGCAGAGC---CUGCU--------AGaCGGUUC- -5'
16422 3' -54.8 NC_004084.1 + 24558 0.73 0.389808
Target:  5'- uCGCGAgGUCUCcuGGAUGAaacCUGCCGAu -3'
miRNA:   3'- -GCGCUgCAGAG--CCUGCUa--GACGGUUc -5'
16422 3' -54.8 NC_004084.1 + 27091 1.08 0.001683
Target:  5'- uCGCGACGUCUCGGACGAUCUGCCAAGc -3'
miRNA:   3'- -GCGCUGCAGAGCCUGCUAGACGGUUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.