Results 1 - 20 of 38 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16422 | 3' | -54.8 | NC_004084.1 | + | 27091 | 1.08 | 0.001683 |
Target: 5'- uCGCGACGUCUCGGACGAUCUGCCAAGc -3' miRNA: 3'- -GCGCUGCAGAGCCUGCUAGACGGUUC- -5' |
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16422 | 3' | -54.8 | NC_004084.1 | + | 21730 | 0.67 | 0.709515 |
Target: 5'- cCGCGACGUCaUCgcaguccuccuGGAcauCGAUgCUGCCGAu -3' miRNA: 3'- -GCGCUGCAG-AG-----------CCU---GCUA-GACGGUUc -5' |
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16422 | 3' | -54.8 | NC_004084.1 | + | 56932 | 0.67 | 0.720102 |
Target: 5'- gGCGACGUCUaccaGGAggucguCGAUC-GCCGc- -3' miRNA: 3'- gCGCUGCAGAg---CCU------GCUAGaCGGUuc -5' |
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16422 | 3' | -54.8 | NC_004084.1 | + | 39621 | 0.66 | 0.751306 |
Target: 5'- gGCGACGUcCUCGacgaguCGAUCguacgcgacGCCGAGg -3' miRNA: 3'- gCGCUGCA-GAGCcu----GCUAGa--------CGGUUC- -5' |
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16422 | 3' | -54.8 | NC_004084.1 | + | 5354 | 0.66 | 0.761485 |
Target: 5'- gGCGGCGaggaCUgGGACGAUCUcgacGUCGAa -3' miRNA: 3'- gCGCUGCa---GAgCCUGCUAGA----CGGUUc -5' |
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16422 | 3' | -54.8 | NC_004084.1 | + | 27552 | 0.66 | 0.770536 |
Target: 5'- cCGCGcacaaggGCcUCcCGGACGGUC-GCCAGGa -3' miRNA: 3'- -GCGC-------UGcAGaGCCUGCUAGaCGGUUC- -5' |
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16422 | 3' | -54.8 | NC_004084.1 | + | 18563 | 0.66 | 0.7912 |
Target: 5'- gGcCGACGgggagaUCGcGACGGUCUGCUucGg -3' miRNA: 3'- gC-GCUGCag----AGC-CUGCUAGACGGuuC- -5' |
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16422 | 3' | -54.8 | NC_004084.1 | + | 45644 | 0.66 | 0.800795 |
Target: 5'- uCGaCGGCGUCUCGGA-----UGCCGAc -3' miRNA: 3'- -GC-GCUGCAGAGCCUgcuagACGGUUc -5' |
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16422 | 3' | -54.8 | NC_004084.1 | + | 27838 | 0.66 | 0.800795 |
Target: 5'- cCGCGAgGUCaCGGACGAgCUGa-AGGa -3' miRNA: 3'- -GCGCUgCAGaGCCUGCUaGACggUUC- -5' |
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16422 | 3' | -54.8 | NC_004084.1 | + | 43332 | 0.67 | 0.698854 |
Target: 5'- cCGaCGACGag-UGGACGGUCUcgaacGCCGAGu -3' miRNA: 3'- -GC-GCUGCagaGCCUGCUAGA-----CGGUUC- -5' |
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16422 | 3' | -54.8 | NC_004084.1 | + | 9615 | 0.68 | 0.677352 |
Target: 5'- uGCG-CGUCuUCGaGCGAUCaacGCCGAGg -3' miRNA: 3'- gCGCuGCAG-AGCcUGCUAGa--CGGUUC- -5' |
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16422 | 3' | -54.8 | NC_004084.1 | + | 52593 | 0.68 | 0.677352 |
Target: 5'- gGCGugGUC-CGGugGGUCgagGCa--- -3' miRNA: 3'- gCGCugCAGaGCCugCUAGa--CGguuc -5' |
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16422 | 3' | -54.8 | NC_004084.1 | + | 21946 | 0.74 | 0.33875 |
Target: 5'- uGuCGGCGUC-CGGACGAcgUCUccGCCGAGa -3' miRNA: 3'- gC-GCUGCAGaGCCUGCU--AGA--CGGUUC- -5' |
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16422 | 3' | -54.8 | NC_004084.1 | + | 16557 | 0.73 | 0.389808 |
Target: 5'- aCGCGGC-UCUCGGGcCGAUCggUGCCGc- -3' miRNA: 3'- -GCGCUGcAGAGCCU-GCUAG--ACGGUuc -5' |
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16422 | 3' | -54.8 | NC_004084.1 | + | 54263 | 0.71 | 0.475189 |
Target: 5'- cCGCGACGUCaUCGGcCG-UCUGgUAAGc -3' miRNA: 3'- -GCGCUGCAG-AGCCuGCuAGACgGUUC- -5' |
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16422 | 3' | -54.8 | NC_004084.1 | + | 3332 | 0.7 | 0.516027 |
Target: 5'- gCGCG-CGUCUCGGACGGgggaggagcgCgccgGCCAc- -3' miRNA: 3'- -GCGCuGCAGAGCCUGCUa---------Ga---CGGUuc -5' |
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16422 | 3' | -54.8 | NC_004084.1 | + | 8240 | 0.7 | 0.547558 |
Target: 5'- gGCGACGUCga-GACGAUCgacGCCGc- -3' miRNA: 3'- gCGCUGCAGagcCUGCUAGa--CGGUuc -5' |
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16422 | 3' | -54.8 | NC_004084.1 | + | 21599 | 0.69 | 0.579672 |
Target: 5'- gGCGAgcagcuggacCGUCUCgGGACGAUCUucgacuuggaccGCCAGc -3' miRNA: 3'- gCGCU----------GCAGAG-CCUGCUAGA------------CGGUUc -5' |
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16422 | 3' | -54.8 | NC_004084.1 | + | 46706 | 0.68 | 0.655682 |
Target: 5'- gGCGACGUCUacCGcGACGAgugGUCGGGc -3' miRNA: 3'- gCGCUGCAGA--GC-CUGCUagaCGGUUC- -5' |
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16422 | 3' | -54.8 | NC_004084.1 | + | 10189 | 0.68 | 0.665449 |
Target: 5'- aCGCGGCGggagacuUCUCaGGCGAUC-GCCuGGa -3' miRNA: 3'- -GCGCUGC-------AGAGcCUGCUAGaCGGuUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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