Results 21 - 38 of 38 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16422 | 3' | -54.8 | NC_004084.1 | + | 51605 | 0.68 | 0.633927 |
Target: 5'- uCGUGACGUCUCuGGCGAcaUCgauUGCCuucGAGa -3' miRNA: 3'- -GCGCUGCAGAGcCUGCU--AG---ACGG---UUC- -5' |
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16422 | 3' | -54.8 | NC_004084.1 | + | 9313 | 0.69 | 0.594801 |
Target: 5'- uCGUGACGcUCUCGGAagaacuccgggugcuUGAUCccGCCGGGc -3' miRNA: 3'- -GCGCUGC-AGAGCCU---------------GCUAGa-CGGUUC- -5' |
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16422 | 3' | -54.8 | NC_004084.1 | + | 8321 | 0.69 | 0.590472 |
Target: 5'- aGaCGGCGUCggcgCGGAUGAUCcaGCCGGc -3' miRNA: 3'- gC-GCUGCAGa---GCCUGCUAGa-CGGUUc -5' |
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16422 | 3' | -54.8 | NC_004084.1 | + | 30232 | 0.7 | 0.568914 |
Target: 5'- gGCGAUGUC-CGcGGCGAcgUCgaacagGCCGAGg -3' miRNA: 3'- gCGCUGCAGaGC-CUGCU--AGa-----CGGUUC- -5' |
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16422 | 3' | -54.8 | NC_004084.1 | + | 47017 | 0.7 | 0.558207 |
Target: 5'- uCGUGGCG-CUCagcguGGugGAagcggaUCUGCCAGGg -3' miRNA: 3'- -GCGCUGCaGAG-----CCugCU------AGACGGUUC- -5' |
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16422 | 3' | -54.8 | NC_004084.1 | + | 5277 | 0.71 | 0.505677 |
Target: 5'- uCGaCGACGUCccgcagCGGAUGGUCcGCCAu- -3' miRNA: 3'- -GC-GCUGCAGa-----GCCUGCUAGaCGGUuc -5' |
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16422 | 3' | -54.8 | NC_004084.1 | + | 46860 | 0.72 | 0.436028 |
Target: 5'- cCGUGaACGUCUCcuguGGGCGGUCUGCgAu- -3' miRNA: 3'- -GCGC-UGCAGAG----CCUGCUAGACGgUuc -5' |
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16422 | 3' | -54.8 | NC_004084.1 | + | 50132 | 0.67 | 0.709515 |
Target: 5'- cCGCGAuCGUC-CGGAUGAcgaggucgUUGUCGAGg -3' miRNA: 3'- -GCGCU-GCAGaGCCUGCUa-------GACGGUUC- -5' |
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16422 | 3' | -54.8 | NC_004084.1 | + | 18090 | 0.67 | 0.741008 |
Target: 5'- uCGagGACGaUCUCGGACG-UCagGUCGAGg -3' miRNA: 3'- -GCg-CUGC-AGAGCCUGCuAGa-CGGUUC- -5' |
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16422 | 3' | -54.8 | NC_004084.1 | + | 50271 | 0.67 | 0.741008 |
Target: 5'- gGCGAgGUcCUC-GACG-UCUGCCGAc -3' miRNA: 3'- gCGCUgCA-GAGcCUGCuAGACGGUUc -5' |
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16422 | 3' | -54.8 | NC_004084.1 | + | 23571 | 0.66 | 0.751306 |
Target: 5'- aGCGauGCGUCUCGuacGACGAcgucgugcUCcGCCGGGa -3' miRNA: 3'- gCGC--UGCAGAGC---CUGCU--------AGaCGGUUC- -5' |
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16422 | 3' | -54.8 | NC_004084.1 | + | 56682 | 0.66 | 0.751306 |
Target: 5'- gGCGGCGggUCUCGGucacCGAUCgagcaGCCGc- -3' miRNA: 3'- gCGCUGC--AGAGCCu---GCUAGa----CGGUuc -5' |
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16422 | 3' | -54.8 | NC_004084.1 | + | 1020 | 0.66 | 0.759459 |
Target: 5'- gGCGACGUCgacgcgaUCGGggGCGcgCUcgaguucGCCGAGg -3' miRNA: 3'- gCGCUGCAG-------AGCC--UGCuaGA-------CGGUUC- -5' |
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16422 | 3' | -54.8 | NC_004084.1 | + | 29345 | 0.66 | 0.761485 |
Target: 5'- gGCGACGaCgcccccgagCGGGCGGUCgcgGCCu-- -3' miRNA: 3'- gCGCUGCaGa--------GCCUGCUAGa--CGGuuc -5' |
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16422 | 3' | -54.8 | NC_004084.1 | + | 14578 | 0.66 | 0.781443 |
Target: 5'- aGCGGCGUCgCGGAUG-UCUcgcGCCc-- -3' miRNA: 3'- gCGCUGCAGaGCCUGCuAGA---CGGuuc -5' |
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16422 | 3' | -54.8 | NC_004084.1 | + | 13988 | 0.66 | 0.790231 |
Target: 5'- aCGCGGCcgugcucGUCcguUCGGaACGggUUGCCGAGc -3' miRNA: 3'- -GCGCUG-------CAG---AGCC-UGCuaGACGGUUC- -5' |
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16422 | 3' | -54.8 | NC_004084.1 | + | 46500 | 0.66 | 0.7912 |
Target: 5'- uCGCGACGUCgc---CGGUC-GCCGAGu -3' miRNA: 3'- -GCGCUGCAGagccuGCUAGaCGGUUC- -5' |
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16422 | 3' | -54.8 | NC_004084.1 | + | 24558 | 0.73 | 0.389808 |
Target: 5'- uCGCGAgGUCUCcuGGAUGAaacCUGCCGAu -3' miRNA: 3'- -GCGCUgCAGAG--CCUGCUa--GACGGUUc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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