miRNA display CGI


Results 1 - 20 of 26 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16424 5' -53.8 NC_004084.1 + 14482 0.66 0.850367
Target:  5'- --cUCCUGAGCGuCGGCUC-CUGccUCGg -3'
miRNA:   3'- gcuAGGGCUUGC-GCUGAGcGACa-AGC- -5'
16424 5' -53.8 NC_004084.1 + 13976 0.66 0.814946
Target:  5'- uCGAUgcaCUGAACGCGGCcgUGCUcguccGUUCGg -3'
miRNA:   3'- -GCUAg--GGCUUGCGCUGa-GCGA-----CAAGC- -5'
16424 5' -53.8 NC_004084.1 + 30793 0.66 0.814946
Target:  5'- gCGAUCCa--GCGCGAgaCGCUGcUCu -3'
miRNA:   3'- -GCUAGGgcuUGCGCUgaGCGACaAGc -5'
16424 5' -53.8 NC_004084.1 + 16793 0.67 0.766513
Target:  5'- uCGAugUCCCGGAcCGuCGcCUCGC-GUUCGu -3'
miRNA:   3'- -GCU--AGGGCUU-GC-GCuGAGCGaCAAGC- -5'
16424 5' -53.8 NC_004084.1 + 33162 0.67 0.766513
Target:  5'- aCGAUCCCGAGaacCGCGAuCUCGacgagcucCUGaagUCGu -3'
miRNA:   3'- -GCUAGGGCUU---GCGCU-GAGC--------GACa--AGC- -5'
16424 5' -53.8 NC_004084.1 + 27217 0.67 0.766513
Target:  5'- aGGUUCgCGAcgACGuCGACgCGCUGUUCc -3'
miRNA:   3'- gCUAGG-GCU--UGC-GCUGaGCGACAAGc -5'
16424 5' -53.8 NC_004084.1 + 46417 0.67 0.765505
Target:  5'- gCGAUCUCguucaaaGAGCGCGucCUCGUgcaGUUCGa -3'
miRNA:   3'- -GCUAGGG-------CUUGCGCu-GAGCGa--CAAGC- -5'
16424 5' -53.8 NC_004084.1 + 42267 0.68 0.756375
Target:  5'- aGA--UCGGACGCGACgacgCGCaGUUCGu -3'
miRNA:   3'- gCUagGGCUUGCGCUGa---GCGaCAAGC- -5'
16424 5' -53.8 NC_004084.1 + 42828 0.68 0.729463
Target:  5'- uGAUUCCGAugACGagugaggaguugaacCGGCUCGC-GUUCGa -3'
miRNA:   3'- gCUAGGGCU--UGC---------------GCUGAGCGaCAAGC- -5'
16424 5' -53.8 NC_004084.1 + 9683 0.68 0.714691
Target:  5'- aCGAUCCCGAggaugAgGUGGucCUUGCUGcUCGa -3'
miRNA:   3'- -GCUAGGGCU-----UgCGCU--GAGCGACaAGC- -5'
16424 5' -53.8 NC_004084.1 + 14562 0.69 0.671725
Target:  5'- gGAUCCCGAACuccucaGCGGCgUCGCggaUGUcUCGc -3'
miRNA:   3'- gCUAGGGCUUG------CGCUG-AGCG---ACA-AGC- -5'
16424 5' -53.8 NC_004084.1 + 26114 0.69 0.660865
Target:  5'- aCGuUCCCGGuCGCGACgaucgCGUUG-UCGg -3'
miRNA:   3'- -GCuAGGGCUuGCGCUGa----GCGACaAGC- -5'
16424 5' -53.8 NC_004084.1 + 1786 0.69 0.649979
Target:  5'- -aGUCCCGAAguuCGGCUgGUUGUUCGg -3'
miRNA:   3'- gcUAGGGCUUgc-GCUGAgCGACAAGC- -5'
16424 5' -53.8 NC_004084.1 + 34924 0.69 0.649979
Target:  5'- gGAUCCaagcuGugGaCGACUCGCUGaUCGa -3'
miRNA:   3'- gCUAGGgc---UugC-GCUGAGCGACaAGC- -5'
16424 5' -53.8 NC_004084.1 + 44393 0.7 0.606372
Target:  5'- cCGAugUCCaCGAGCGCGGCUgGCUcggcaacccGUUCc -3'
miRNA:   3'- -GCU--AGG-GCUUGCGCUGAgCGA---------CAAGc -5'
16424 5' -53.8 NC_004084.1 + 27277 0.7 0.595502
Target:  5'- gCGGUCCgaaccgcugaCGAuCGCGGCgcCGCUGUUCa -3'
miRNA:   3'- -GCUAGG----------GCUuGCGCUGa-GCGACAAGc -5'
16424 5' -53.8 NC_004084.1 + 57345 0.71 0.573861
Target:  5'- aGGUCgUGAagauGCGCGACgagugGCUGUUCGa -3'
miRNA:   3'- gCUAGgGCU----UGCGCUGag---CGACAAGC- -5'
16424 5' -53.8 NC_004084.1 + 55989 0.71 0.552408
Target:  5'- uGAUCgCCGAugGCGAgcaUCGCUGg--- -3'
miRNA:   3'- gCUAG-GGCUugCGCUg--AGCGACaagc -5'
16424 5' -53.8 NC_004084.1 + 16875 0.73 0.422098
Target:  5'- gGAUCUCGAGCGCGGCgucugcuccgaucgaCGCUGUgagCa -3'
miRNA:   3'- gCUAGGGCUUGCGCUGa--------------GCGACAa--Gc -5'
16424 5' -53.8 NC_004084.1 + 1204 0.73 0.421159
Target:  5'- uCGAUCCUGAACGCuGGCUgGCUcggCGg -3'
miRNA:   3'- -GCUAGGGCUUGCG-CUGAgCGAcaaGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.