miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16426 3' -57.8 NC_004084.1 + 57808 0.67 0.540253
Target:  5'- gCCAGCUUcaacgaucaacucgaGGGCGUcCUCACCGAa-- -3'
miRNA:   3'- gGGUUGGA---------------CCCGCAcGAGUGGCUguu -5'
16426 3' -57.8 NC_004084.1 + 1639 0.67 0.536045
Target:  5'- gCCGACCggcuucugcgUGGG-GUGCUCGuuccCCGACGu -3'
miRNA:   3'- gGGUUGG----------ACCCgCACGAGU----GGCUGUu -5'
16426 3' -57.8 NC_004084.1 + 43775 0.67 0.48454
Target:  5'- aUCGA-CUGGGC--GCUCGCCGGCGGa -3'
miRNA:   3'- gGGUUgGACCCGcaCGAGUGGCUGUU- -5'
16426 3' -57.8 NC_004084.1 + 43752 0.68 0.474519
Target:  5'- aCCCGGCC-GGGac-GCUCGCgGGCAu -3'
miRNA:   3'- -GGGUUGGaCCCgcaCGAGUGgCUGUu -5'
16426 3' -57.8 NC_004084.1 + 11533 0.68 0.454795
Target:  5'- -gCAGCCgccgGGGCGUgGCggcaGCCGACGc -3'
miRNA:   3'- ggGUUGGa---CCCGCA-CGag--UGGCUGUu -5'
16426 3' -57.8 NC_004084.1 + 53330 0.69 0.416731
Target:  5'- gCCC-GCCUGGGCagaccGCUCACCGcCc- -3'
miRNA:   3'- -GGGuUGGACCCGca---CGAGUGGCuGuu -5'
16426 3' -57.8 NC_004084.1 + 52152 0.69 0.407523
Target:  5'- gCCC-GCCggGGGCcaGUGCUCAUCGuCGAc -3'
miRNA:   3'- -GGGuUGGa-CCCG--CACGAGUGGCuGUU- -5'
16426 3' -57.8 NC_004084.1 + 3396 0.69 0.380677
Target:  5'- aCgGACCUGGGCGcagcUGCUCuguaACgGGCAGg -3'
miRNA:   3'- gGgUUGGACCCGC----ACGAG----UGgCUGUU- -5'
16426 3' -57.8 NC_004084.1 + 7235 0.71 0.300071
Target:  5'- gCCGACCUcgacgaucGGcGCGUGCUCGgCGACc- -3'
miRNA:   3'- gGGUUGGA--------CC-CGCACGAGUgGCUGuu -5'
16426 3' -57.8 NC_004084.1 + 54746 0.71 0.292777
Target:  5'- gCCAGCCcggUGGGCGUGC-CAUCGGu-- -3'
miRNA:   3'- gGGUUGG---ACCCGCACGaGUGGCUguu -5'
16426 3' -57.8 NC_004084.1 + 32277 1.07 0.000774
Target:  5'- gCCCAACCUGGGCGUGCUCACCGACAAc -3'
miRNA:   3'- -GGGUUGGACCCGCACGAGUGGCUGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.