Results 1 - 11 of 11 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16426 | 3' | -57.8 | NC_004084.1 | + | 1639 | 0.67 | 0.536045 |
Target: 5'- gCCGACCggcuucugcgUGGG-GUGCUCGuuccCCGACGu -3' miRNA: 3'- gGGUUGG----------ACCCgCACGAGU----GGCUGUu -5' |
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16426 | 3' | -57.8 | NC_004084.1 | + | 3396 | 0.69 | 0.380677 |
Target: 5'- aCgGACCUGGGCGcagcUGCUCuguaACgGGCAGg -3' miRNA: 3'- gGgUUGGACCCGC----ACGAG----UGgCUGUU- -5' |
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16426 | 3' | -57.8 | NC_004084.1 | + | 7235 | 0.71 | 0.300071 |
Target: 5'- gCCGACCUcgacgaucGGcGCGUGCUCGgCGACc- -3' miRNA: 3'- gGGUUGGA--------CC-CGCACGAGUgGCUGuu -5' |
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16426 | 3' | -57.8 | NC_004084.1 | + | 11533 | 0.68 | 0.454795 |
Target: 5'- -gCAGCCgccgGGGCGUgGCggcaGCCGACGc -3' miRNA: 3'- ggGUUGGa---CCCGCA-CGag--UGGCUGUu -5' |
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16426 | 3' | -57.8 | NC_004084.1 | + | 32277 | 1.07 | 0.000774 |
Target: 5'- gCCCAACCUGGGCGUGCUCACCGACAAc -3' miRNA: 3'- -GGGUUGGACCCGCACGAGUGGCUGUU- -5' |
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16426 | 3' | -57.8 | NC_004084.1 | + | 43752 | 0.68 | 0.474519 |
Target: 5'- aCCCGGCC-GGGac-GCUCGCgGGCAu -3' miRNA: 3'- -GGGUUGGaCCCgcaCGAGUGgCUGUu -5' |
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16426 | 3' | -57.8 | NC_004084.1 | + | 43775 | 0.67 | 0.48454 |
Target: 5'- aUCGA-CUGGGC--GCUCGCCGGCGGa -3' miRNA: 3'- gGGUUgGACCCGcaCGAGUGGCUGUU- -5' |
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16426 | 3' | -57.8 | NC_004084.1 | + | 52152 | 0.69 | 0.407523 |
Target: 5'- gCCC-GCCggGGGCcaGUGCUCAUCGuCGAc -3' miRNA: 3'- -GGGuUGGa-CCCG--CACGAGUGGCuGUU- -5' |
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16426 | 3' | -57.8 | NC_004084.1 | + | 53330 | 0.69 | 0.416731 |
Target: 5'- gCCC-GCCUGGGCagaccGCUCACCGcCc- -3' miRNA: 3'- -GGGuUGGACCCGca---CGAGUGGCuGuu -5' |
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16426 | 3' | -57.8 | NC_004084.1 | + | 54746 | 0.71 | 0.292777 |
Target: 5'- gCCAGCCcggUGGGCGUGC-CAUCGGu-- -3' miRNA: 3'- gGGUUGG---ACCCGCACGaGUGGCUguu -5' |
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16426 | 3' | -57.8 | NC_004084.1 | + | 57808 | 0.67 | 0.540253 |
Target: 5'- gCCAGCUUcaacgaucaacucgaGGGCGUcCUCACCGAa-- -3' miRNA: 3'- gGGUUGGA---------------CCCGCAcGAGUGGCUguu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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