miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16427 3' -46.7 NC_004084.1 + 44484 0.66 0.989671
Target:  5'- uGAGGcUCgCCUAAAcGAugACGAGGAGUUCc -3'
miRNA:   3'- -UUCU-AGaGGGUUU-CU--UGCUCUUCAAG- -5'
16427 3' -46.7 NC_004084.1 + 21958 0.67 0.986267
Target:  5'- cGAGAUCUCCCGGAcGACGcGGAuacccAGgaugUCg -3'
miRNA:   3'- -UUCUAGAGGGUUUcUUGC-UCU-----UCa---AG- -5'
16427 3' -46.7 NC_004084.1 + 50581 0.67 0.986267
Target:  5'- -cGAUCUCaCgGAAGAucaccuCGAGGcAGUUCg -3'
miRNA:   3'- uuCUAGAG-GgUUUCUu-----GCUCU-UCAAG- -5'
16427 3' -46.7 NC_004084.1 + 17389 0.67 0.982062
Target:  5'- gAGGAUCUCgCCGGcAGAGugauCGAGGAGaUCu -3'
miRNA:   3'- -UUCUAGAG-GGUU-UCUU----GCUCUUCaAG- -5'
16427 3' -46.7 NC_004084.1 + 36946 0.67 0.979628
Target:  5'- -cGAUCgccgCCCucGAGGGCGAGccGGUUCc -3'
miRNA:   3'- uuCUAGa---GGGu-UUCUUGCUCu-UCAAG- -5'
16427 3' -46.7 NC_004084.1 + 40583 0.68 0.967406
Target:  5'- cGAGGUCa-CCAucGAacucgGCGAGGAGUUCc -3'
miRNA:   3'- -UUCUAGagGGUuuCU-----UGCUCUUCAAG- -5'
16427 3' -46.7 NC_004084.1 + 18008 0.71 0.887243
Target:  5'- gAAGGUCUCUCGGgggugcuguAGAugGGGGAGaUCa -3'
miRNA:   3'- -UUCUAGAGGGUU---------UCUugCUCUUCaAG- -5'
16427 3' -46.7 NC_004084.1 + 10904 0.72 0.84407
Target:  5'- cGGGUaCUCCCGAu---CGGGGAGUUCg -3'
miRNA:   3'- uUCUA-GAGGGUUucuuGCUCUUCAAG- -5'
16427 3' -46.7 NC_004084.1 + 4885 0.72 0.834625
Target:  5'- ----gUUCCCGAAGAacaggaggcguACGAGGAGUUCc -3'
miRNA:   3'- uucuaGAGGGUUUCU-----------UGCUCUUCAAG- -5'
16427 3' -46.7 NC_004084.1 + 37222 0.75 0.717301
Target:  5'- -cGAUCUCCUAccGGGGCGAGAAGa-- -3'
miRNA:   3'- uuCUAGAGGGUu-UCUUGCUCUUCaag -5'
16427 3' -46.7 NC_004084.1 + 32959 1.08 0.007819
Target:  5'- gAAGAUCUCCCAAAGAACGAGAAGUUCu -3'
miRNA:   3'- -UUCUAGAGGGUUUCUUGCUCUUCAAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.