miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16427 5' -53.6 NC_004084.1 + 36941 0.66 0.796761
Target:  5'- -cGAggCGAucGCcGCCCUCGAGGGcGAg -3'
miRNA:   3'- caCUaaGUU--CGaCGGGAGCUCCU-CUg -5'
16427 5' -53.6 NC_004084.1 + 13734 0.66 0.786776
Target:  5'- uUGAacgUCGucuguccggucGGCUcGCCCUCGAGGucGCg -3'
miRNA:   3'- cACUa--AGU-----------UCGA-CGGGAGCUCCucUG- -5'
16427 5' -53.6 NC_004084.1 + 6029 0.66 0.785768
Target:  5'- ----cUCGAGUUcaacgagGUCCUCGAGGAGGa -3'
miRNA:   3'- cacuaAGUUCGA-------CGGGAGCUCCUCUg -5'
16427 5' -53.6 NC_004084.1 + 28105 0.67 0.734572
Target:  5'- -cGGUUCGGGgUGCgCCUCGAcGAGcGCg -3'
miRNA:   3'- caCUAAGUUCgACG-GGAGCUcCUC-UG- -5'
16427 5' -53.6 NC_004084.1 + 7492 0.67 0.723761
Target:  5'- -cGAgaCGAGCaagucgGCCgaCGGGGAGACu -3'
miRNA:   3'- caCUaaGUUCGa-----CGGgaGCUCCUCUG- -5'
16427 5' -53.6 NC_004084.1 + 42122 0.67 0.712854
Target:  5'- aGUGGUc---GCUGCCgUUGAGGuGACu -3'
miRNA:   3'- -CACUAaguuCGACGGgAGCUCCuCUG- -5'
16427 5' -53.6 NC_004084.1 + 30529 0.67 0.712854
Target:  5'- ----cUCAAGCcacagauccuuUGCCCUCGAGGucGCc -3'
miRNA:   3'- cacuaAGUUCG-----------ACGGGAGCUCCucUG- -5'
16427 5' -53.6 NC_004084.1 + 55022 0.68 0.690804
Target:  5'- cGUGcgUCucGUUGUgCUCGAGGAG-Cu -3'
miRNA:   3'- -CACuaAGuuCGACGgGAGCUCCUCuG- -5'
16427 5' -53.6 NC_004084.1 + 42575 0.68 0.689695
Target:  5'- aUGGggCGAGCUGCCaCUCGugcuacaacgaccAGGAGcCg -3'
miRNA:   3'- cACUaaGUUCGACGG-GAGC-------------UCCUCuG- -5'
16427 5' -53.6 NC_004084.1 + 39462 0.69 0.612372
Target:  5'- cUGGcgCGAGC-GCCgaUCGAGGAGGCc -3'
miRNA:   3'- cACUaaGUUCGaCGGg-AGCUCCUCUG- -5'
16427 5' -53.6 NC_004084.1 + 21457 0.69 0.587733
Target:  5'- cGUGAcgaggaaccGGCUcGCCCUCGAGGGcGGCg -3'
miRNA:   3'- -CACUaagu-----UCGA-CGGGAGCUCCU-CUG- -5'
16427 5' -53.6 NC_004084.1 + 10905 0.7 0.556657
Target:  5'- -cGAUUCGAggaggcGCUGCCaCUCGAGGGc-- -3'
miRNA:   3'- caCUAAGUU------CGACGG-GAGCUCCUcug -5'
16427 5' -53.6 NC_004084.1 + 17262 0.7 0.556657
Target:  5'- -cGGUgCAgucGGCgaUGCCCUCGGuGGAGGCg -3'
miRNA:   3'- caCUAaGU---UCG--ACGGGAGCU-CCUCUG- -5'
16427 5' -53.6 NC_004084.1 + 11558 0.72 0.43089
Target:  5'- -cGAcgCAAacGCUGUCCUCGAGGAaucGACa -3'
miRNA:   3'- caCUaaGUU--CGACGGGAGCUCCU---CUG- -5'
16427 5' -53.6 NC_004084.1 + 53098 0.75 0.315362
Target:  5'- cGUGAUcuUCGAGUcgGCCCUCGAaGAGAUc -3'
miRNA:   3'- -CACUA--AGUUCGa-CGGGAGCUcCUCUG- -5'
16427 5' -53.6 NC_004084.1 + 8593 0.76 0.262848
Target:  5'- aGUGAUUCGaugaacucgucgaGGCUGUCCUCGAGGccGAUc -3'
miRNA:   3'- -CACUAAGU-------------UCGACGGGAGCUCCu-CUG- -5'
16427 5' -53.6 NC_004084.1 + 31443 0.77 0.218844
Target:  5'- --cGUUCAGGgugaCUGCCCUCGAGGAcGGCa -3'
miRNA:   3'- cacUAAGUUC----GACGGGAGCUCCU-CUG- -5'
16427 5' -53.6 NC_004084.1 + 22180 0.8 0.148712
Target:  5'- -gGAUcgCAgcgcccaccGGUUGCCCUCGAGGAGACc -3'
miRNA:   3'- caCUAa-GU---------UCGACGGGAGCUCCUCUG- -5'
16427 5' -53.6 NC_004084.1 + 32994 1.09 0.001368
Target:  5'- aGUGAUUCAAGCUGCCCUCGAGGAGACc -3'
miRNA:   3'- -CACUAAGUUCGACGGGAGCUCCUCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.