miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16428 5' -55.9 NC_004084.1 + 45787 0.66 0.728827
Target:  5'- cUGCgagUGGU-UgACCGACCGaucCGGUcagGCCg -3'
miRNA:   3'- -ACG---ACCAuAgUGGCUGGC---GCCAa--CGG- -5'
16428 5' -55.9 NC_004084.1 + 27843 0.66 0.707695
Target:  5'- cGCUccGGU-UCGCCGACCGUc---GCCg -3'
miRNA:   3'- aCGA--CCAuAGUGGCUGGCGccaaCGG- -5'
16428 5' -55.9 NC_004084.1 + 55573 0.66 0.707695
Target:  5'- --aUGGUGUcCugCGAuccaCCGCGGacGCCg -3'
miRNA:   3'- acgACCAUA-GugGCU----GGCGCCaaCGG- -5'
16428 5' -55.9 NC_004084.1 + 9088 0.66 0.67548
Target:  5'- cGC-GGUA-CGCCGACCGgGcGaUGUCg -3'
miRNA:   3'- aCGaCCAUaGUGGCUGGCgC-CaACGG- -5'
16428 5' -55.9 NC_004084.1 + 43123 0.67 0.664647
Target:  5'- gGC-GGUcAUCACCGucgccaGCCGCcGGauaUUGCCg -3'
miRNA:   3'- aCGaCCA-UAGUGGC------UGGCG-CC---AACGG- -5'
16428 5' -55.9 NC_004084.1 + 28884 0.67 0.653785
Target:  5'- cGCUccGGcgcGUCACCGGCCGCGcGaucgagGCUg -3'
miRNA:   3'- aCGA--CCa--UAGUGGCUGGCGC-Caa----CGG- -5'
16428 5' -55.9 NC_004084.1 + 39840 0.67 0.621119
Target:  5'- cGCUcGaGUccAUCGgCGGCCGCGGc-GCCg -3'
miRNA:   3'- aCGA-C-CA--UAGUgGCUGGCGCCaaCGG- -5'
16428 5' -55.9 NC_004084.1 + 52980 0.67 0.610237
Target:  5'- cGCUGG--UCGCCGAUCGCGau--CCa -3'
miRNA:   3'- aCGACCauAGUGGCUGGCGCcaacGG- -5'
16428 5' -55.9 NC_004084.1 + 9671 0.68 0.565907
Target:  5'- gGCUgaaccccugacagGGUGgccCGCCggaGACCGCGGUgaguugGCCg -3'
miRNA:   3'- aCGA-------------CCAUa--GUGG---CUGGCGCCAa-----CGG- -5'
16428 5' -55.9 NC_004084.1 + 11315 0.69 0.54563
Target:  5'- aUGCaGGU---GCCGACCGgCGgGUUGUCg -3'
miRNA:   3'- -ACGaCCAuagUGGCUGGC-GC-CAACGG- -5'
16428 5' -55.9 NC_004084.1 + 8825 0.69 0.514118
Target:  5'- gUGgaGcGUGUCGCCGACacaGUGGUcGCa -3'
miRNA:   3'- -ACgaC-CAUAGUGGCUGg--CGCCAaCGg -5'
16428 5' -55.9 NC_004084.1 + 22135 0.7 0.443821
Target:  5'- gGCUGGgaagcgAUgACUGACCGCGagcGCCu -3'
miRNA:   3'- aCGACCa-----UAgUGGCUGGCGCcaaCGG- -5'
16428 5' -55.9 NC_004084.1 + 10747 0.71 0.405238
Target:  5'- gGCUGGUAUCccugcCCGACCgaucuucgggccaGCGGgUGCg -3'
miRNA:   3'- aCGACCAUAGu----GGCUGG-------------CGCCaACGg -5'
16428 5' -55.9 NC_004084.1 + 19954 0.73 0.313578
Target:  5'- gGUUGGguagaGCCGGCCGUGGUUGaCg -3'
miRNA:   3'- aCGACCauag-UGGCUGGCGCCAACgG- -5'
16428 5' -55.9 NC_004084.1 + 34055 1.12 0.000627
Target:  5'- gUGCUGGUAUCACCGACCGCGGUUGCCu -3'
miRNA:   3'- -ACGACCAUAGUGGCUGGCGCCAACGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.