miRNA display CGI


Results 1 - 20 of 198 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1643 3' -51.4 NC_001347.2 + 188398 0.65 0.998394
Target:  5'- -gACGACGAUGAUGAUGaCGAGaaaaacaucuuuaCGCc -3'
miRNA:   3'- aaUGCUGUUGCUACUGCcGCUUg------------GCG- -5'
1643 3' -51.4 NC_001347.2 + 54696 0.66 0.998213
Target:  5'- -gACGACuuUGGUGACuugGGCGAuuCUGUg -3'
miRNA:   3'- aaUGCUGuuGCUACUG---CCGCUu-GGCG- -5'
1643 3' -51.4 NC_001347.2 + 16864 0.66 0.998213
Target:  5'- cUGCGuACAcauggGCGA-GGCGGCGcguCUGCa -3'
miRNA:   3'- aAUGC-UGU-----UGCUaCUGCCGCuu-GGCG- -5'
1643 3' -51.4 NC_001347.2 + 159268 0.66 0.998213
Target:  5'- -gGCGGCGagGCGAaacuggugcUGGCGGCGccGGgCGCc -3'
miRNA:   3'- aaUGCUGU--UGCU---------ACUGCCGC--UUgGCG- -5'
1643 3' -51.4 NC_001347.2 + 103195 0.66 0.998213
Target:  5'- -cGCGACAccACGgcGuuuCGGaCGuACCGCg -3'
miRNA:   3'- aaUGCUGU--UGCuaCu--GCC-GCuUGGCG- -5'
1643 3' -51.4 NC_001347.2 + 228262 0.66 0.998213
Target:  5'- gUugGACGGCGuaguuucgggGAUuGUGAACCGUg -3'
miRNA:   3'- aAugCUGUUGCua--------CUGcCGCUUGGCG- -5'
1643 3' -51.4 NC_001347.2 + 192197 0.66 0.998213
Target:  5'- -cGCGGC-GCGGgcuCGGCGucCCGCc -3'
miRNA:   3'- aaUGCUGuUGCUacuGCCGCuuGGCG- -5'
1643 3' -51.4 NC_001347.2 + 78690 0.66 0.998016
Target:  5'- -cGCGAC-GCGGcgcccuuccguccgcUGGCGGUGGaagacaACCGCc -3'
miRNA:   3'- aaUGCUGuUGCU---------------ACUGCCGCU------UGGCG- -5'
1643 3' -51.4 NC_001347.2 + 21772 0.66 0.997874
Target:  5'- cUACGGCGcuGgGAcuuUGGCugcuGCGGGCCGCg -3'
miRNA:   3'- aAUGCUGU--UgCU---ACUGc---CGCUUGGCG- -5'
1643 3' -51.4 NC_001347.2 + 155290 0.66 0.997874
Target:  5'- -aGCGGCGGCGAcgGAgcUGGUGGACgGg -3'
miRNA:   3'- aaUGCUGUUGCUa-CU--GCCGCUUGgCg -5'
1643 3' -51.4 NC_001347.2 + 102595 0.66 0.997874
Target:  5'- -aGCGA-AACGGUGGCGcuGUGuacACCGCg -3'
miRNA:   3'- aaUGCUgUUGCUACUGC--CGCu--UGGCG- -5'
1643 3' -51.4 NC_001347.2 + 157620 0.66 0.997874
Target:  5'- -aGCGGCugcacGCGuuguugGACGGUGucACCGCc -3'
miRNA:   3'- aaUGCUGu----UGCua----CUGCCGCu-UGGCG- -5'
1643 3' -51.4 NC_001347.2 + 199996 0.66 0.997874
Target:  5'- -aGCGACGugACGA--GCuGCGAcGCCGCg -3'
miRNA:   3'- aaUGCUGU--UGCUacUGcCGCU-UGGCG- -5'
1643 3' -51.4 NC_001347.2 + 212926 0.66 0.997874
Target:  5'- gUGCuuCAACGuuaccGGCGGCauaguGGACCGCg -3'
miRNA:   3'- aAUGcuGUUGCua---CUGCCG-----CUUGGCG- -5'
1643 3' -51.4 NC_001347.2 + 188455 0.66 0.997874
Target:  5'- -aGCGGCAAgggcgccgcuagUGGUGGCGGUGuuuCCaGCa -3'
miRNA:   3'- aaUGCUGUU------------GCUACUGCCGCuu-GG-CG- -5'
1643 3' -51.4 NC_001347.2 + 228576 0.66 0.997874
Target:  5'- -cGCGGCAGCGuacGACGuuccagucaGCGAgGCCGUc -3'
miRNA:   3'- aaUGCUGUUGCua-CUGC---------CGCU-UGGCG- -5'
1643 3' -51.4 NC_001347.2 + 87248 0.66 0.997483
Target:  5'- gUGCGAgCAguugGgGAUG-CGGCGcGCCGUa -3'
miRNA:   3'- aAUGCU-GU----UgCUACuGCCGCuUGGCG- -5'
1643 3' -51.4 NC_001347.2 + 156549 0.66 0.997483
Target:  5'- -cGCGaACGGCGGgaaaGCGGUccucucGGACCGCa -3'
miRNA:   3'- aaUGC-UGUUGCUac--UGCCG------CUUGGCG- -5'
1643 3' -51.4 NC_001347.2 + 125283 0.66 0.997483
Target:  5'- -aACGACcgcCGGUGGCgucaguGGCGcAACCGUc -3'
miRNA:   3'- aaUGCUGuu-GCUACUG------CCGC-UUGGCG- -5'
1643 3' -51.4 NC_001347.2 + 128768 0.66 0.997483
Target:  5'- -aACGugAccuuccuaGCGAcGGCGGCcaugGAGCUGCa -3'
miRNA:   3'- aaUGCugU--------UGCUaCUGCCG----CUUGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.