miRNA display CGI


Results 1 - 20 of 198 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1643 3' -51.4 NC_001347.2 + 129255 1.11 0.010145
Target:  5'- cUUACGACAACGAUGACGGCGAACCGCa -3'
miRNA:   3'- -AAUGCUGUUGCUACUGCCGCUUGGCG- -5'
1643 3' -51.4 NC_001347.2 + 192048 0.89 0.19101
Target:  5'- -gGCGACGACGGUGGCGGCGAcgacACgGCg -3'
miRNA:   3'- aaUGCUGUUGCUACUGCCGCU----UGgCG- -5'
1643 3' -51.4 NC_001347.2 + 7956 0.8 0.562604
Target:  5'- gUGCGACuGACGGUGGCGGCGGcagaccaacaugcGCCGa -3'
miRNA:   3'- aAUGCUG-UUGCUACUGCCGCU-------------UGGCg -5'
1643 3' -51.4 NC_001347.2 + 67442 0.79 0.58283
Target:  5'- -gACGACGGCGAcgucgacGACGGCGAcgaaaccACCGCu -3'
miRNA:   3'- aaUGCUGUUGCUa------CUGCCGCU-------UGGCG- -5'
1643 3' -51.4 NC_001347.2 + 111623 0.79 0.593
Target:  5'- cUGCG-CAGCGAcaugGACGGCGAcgugcguACCGCg -3'
miRNA:   3'- aAUGCuGUUGCUa---CUGCCGCU-------UGGCG- -5'
1643 3' -51.4 NC_001347.2 + 7825 0.79 0.61444
Target:  5'- -gGCGugAcgaagcugguACGGUGGCGGCGGACUGUc -3'
miRNA:   3'- aaUGCugU----------UGCUACUGCCGCUUGGCG- -5'
1643 3' -51.4 NC_001347.2 + 173688 0.79 0.624675
Target:  5'- -cACGACcGCGGUGGCGGCGGugguuCCGg -3'
miRNA:   3'- aaUGCUGuUGCUACUGCCGCUu----GGCg -5'
1643 3' -51.4 NC_001347.2 + 65714 0.78 0.645154
Target:  5'- -cGCGAC-ACGGUGGCGGCGGuggaggGCgCGCg -3'
miRNA:   3'- aaUGCUGuUGCUACUGCCGCU------UG-GCG- -5'
1643 3' -51.4 NC_001347.2 + 210404 0.78 0.655381
Target:  5'- aUACGGCGugaugcugUGAUGACGGCGGucucaacgGCCGCg -3'
miRNA:   3'- aAUGCUGUu-------GCUACUGCCGCU--------UGGCG- -5'
1643 3' -51.4 NC_001347.2 + 75410 0.78 0.675773
Target:  5'- -aGCGGCGGCcGUGGCGGCGGcaGCgGCg -3'
miRNA:   3'- aaUGCUGUUGcUACUGCCGCU--UGgCG- -5'
1643 3' -51.4 NC_001347.2 + 195503 0.77 0.696021
Target:  5'- -cAUGACGACGGUGACGagcgccuauuucGCGAuCCGCu -3'
miRNA:   3'- aaUGCUGUUGCUACUGC------------CGCUuGGCG- -5'
1643 3' -51.4 NC_001347.2 + 156798 0.77 0.716055
Target:  5'- -gGCGGCAGCGGcaGCGGCGGGCCa- -3'
miRNA:   3'- aaUGCUGUUGCUacUGCCGCUUGGcg -5'
1643 3' -51.4 NC_001347.2 + 1706 0.77 0.716055
Target:  5'- -gGCGACGGCGcucgGACGG-GAGCUGCg -3'
miRNA:   3'- aaUGCUGUUGCua--CUGCCgCUUGGCG- -5'
1643 3' -51.4 NC_001347.2 + 105960 0.77 0.735803
Target:  5'- -aGCG-CAGCGu---CGGCGAGCCGCg -3'
miRNA:   3'- aaUGCuGUUGCuacuGCCGCUUGGCG- -5'
1643 3' -51.4 NC_001347.2 + 63827 0.77 0.735803
Target:  5'- -gGCGGCGGCGAUGGCGGgGcuGGuuGCu -3'
miRNA:   3'- aaUGCUGUUGCUACUGCCgC--UUggCG- -5'
1643 3' -51.4 NC_001347.2 + 1976 0.76 0.752307
Target:  5'- -gACGGCGGCGggGacgacgucccgccaGCGGCGAGCgGCa -3'
miRNA:   3'- aaUGCUGUUGCuaC--------------UGCCGCUUGgCG- -5'
1643 3' -51.4 NC_001347.2 + 109474 0.76 0.759016
Target:  5'- -gGCGGCGGCGccAUGGCGggcgccuccacuuccGCGGGCCGCa -3'
miRNA:   3'- aaUGCUGUUGC--UACUGC---------------CGCUUGGCG- -5'
1643 3' -51.4 NC_001347.2 + 186522 0.76 0.764723
Target:  5'- -cGCGAUAACGAUcGGCGGCGAuCagaGCu -3'
miRNA:   3'- aaUGCUGUUGCUA-CUGCCGCUuGg--CG- -5'
1643 3' -51.4 NC_001347.2 + 12618 0.76 0.764723
Target:  5'- -cAUGAUAAUGGgugugGugGGCGAAUCGCu -3'
miRNA:   3'- aaUGCUGUUGCUa----CugCCGCUUGGCG- -5'
1643 3' -51.4 NC_001347.2 + 77964 0.76 0.768505
Target:  5'- -cGCGGCAagcacauccgcuuguACG-UGGCGGcCGAACCGCu -3'
miRNA:   3'- aaUGCUGU---------------UGCuACUGCC-GCUUGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.