miRNA display CGI


Results 21 - 40 of 198 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1643 3' -51.4 NC_001347.2 + 777 0.66 0.997483
Target:  5'- -cGCGGCAcacggGCGAcGAaGGCGu-CCGCg -3'
miRNA:   3'- aaUGCUGU-----UGCUaCUgCCGCuuGGCG- -5'
1643 3' -51.4 NC_001347.2 + 85639 0.66 0.997483
Target:  5'- cUGCaACAGCGAggccACGGCc-GCCGCg -3'
miRNA:   3'- aAUGcUGUUGCUac--UGCCGcuUGGCG- -5'
1643 3' -51.4 NC_001347.2 + 128768 0.66 0.997483
Target:  5'- -aACGugAccuuccuaGCGAcGGCGGCcaugGAGCUGCa -3'
miRNA:   3'- aaUGCugU--------UGCUaCUGCCG----CUUGGCG- -5'
1643 3' -51.4 NC_001347.2 + 125283 0.66 0.997483
Target:  5'- -aACGACcgcCGGUGGCgucaguGGCGcAACCGUc -3'
miRNA:   3'- aaUGCUGuu-GCUACUG------CCGC-UUGGCG- -5'
1643 3' -51.4 NC_001347.2 + 156549 0.66 0.997483
Target:  5'- -cGCGaACGGCGGgaaaGCGGUccucucGGACCGCa -3'
miRNA:   3'- aaUGC-UGUUGCUac--UGCCG------CUUGGCG- -5'
1643 3' -51.4 NC_001347.2 + 87248 0.66 0.997483
Target:  5'- gUGCGAgCAguugGgGAUG-CGGCGcGCCGUa -3'
miRNA:   3'- aAUGCU-GU----UgCUACuGCCGCuUGGCG- -5'
1643 3' -51.4 NC_001347.2 + 210493 0.66 0.997483
Target:  5'- -aGCGGCGGuCGGUccaggucaACGGCGuuucGCCGCg -3'
miRNA:   3'- aaUGCUGUU-GCUAc-------UGCCGCu---UGGCG- -5'
1643 3' -51.4 NC_001347.2 + 14014 0.66 0.997034
Target:  5'- --uCGGCGGCcggGGCuGUGAACCGCu -3'
miRNA:   3'- aauGCUGUUGcuaCUGcCGCUUGGCG- -5'
1643 3' -51.4 NC_001347.2 + 19168 0.66 0.997034
Target:  5'- -gACGAgGACGAgaGCGGCcgcccccggaGAAUCGCc -3'
miRNA:   3'- aaUGCUgUUGCUacUGCCG----------CUUGGCG- -5'
1643 3' -51.4 NC_001347.2 + 117850 0.66 0.997034
Target:  5'- -gGCGGCcGCuGAc-GCGGCG-ACCGCg -3'
miRNA:   3'- aaUGCUGuUG-CUacUGCCGCuUGGCG- -5'
1643 3' -51.4 NC_001347.2 + 39677 0.66 0.997034
Target:  5'- ---aGGCAGCGAcgUGcACGGCGcgugcuggcGCCGCc -3'
miRNA:   3'- aaugCUGUUGCU--AC-UGCCGCu--------UGGCG- -5'
1643 3' -51.4 NC_001347.2 + 118025 0.66 0.997034
Target:  5'- -cGCGGCGACGGUccuuCGuCGAGCuCGCa -3'
miRNA:   3'- aaUGCUGUUGCUAcu--GCcGCUUG-GCG- -5'
1643 3' -51.4 NC_001347.2 + 136198 0.66 0.997034
Target:  5'- -cGCGGacuGCGccggggGGCGGCGGGCaCGCc -3'
miRNA:   3'- aaUGCUgu-UGCua----CUGCCGCUUG-GCG- -5'
1643 3' -51.4 NC_001347.2 + 165418 0.66 0.997034
Target:  5'- -cGCGcCAACGAguUGACGGUGAcgaguaCGUa -3'
miRNA:   3'- aaUGCuGUUGCU--ACUGCCGCUug----GCG- -5'
1643 3' -51.4 NC_001347.2 + 210097 0.66 0.997034
Target:  5'- -cGCGucaggaGCAGCGAgucccGGCuGCGGACCGUc -3'
miRNA:   3'- aaUGC------UGUUGCUa----CUGcCGCUUGGCG- -5'
1643 3' -51.4 NC_001347.2 + 15637 0.66 0.997034
Target:  5'- -cGCGAgGGCGcgGAgcgGGUGAuuACCGCc -3'
miRNA:   3'- aaUGCUgUUGCuaCUg--CCGCU--UGGCG- -5'
1643 3' -51.4 NC_001347.2 + 192992 0.66 0.996985
Target:  5'- -cGCGGCugagcguguggagGACGggGugGaGCGggUCGCc -3'
miRNA:   3'- aaUGCUG-------------UUGCuaCugC-CGCuuGGCG- -5'
1643 3' -51.4 NC_001347.2 + 107293 0.66 0.99652
Target:  5'- aUUACGuuuCAACG-UGACcuGCG-ACCGCa -3'
miRNA:   3'- -AAUGCu--GUUGCuACUGc-CGCuUGGCG- -5'
1643 3' -51.4 NC_001347.2 + 135100 0.66 0.99652
Target:  5'- -gACGACAAUugaGGUGucAUGGCGGcccACCGUc -3'
miRNA:   3'- aaUGCUGUUG---CUAC--UGCCGCU---UGGCG- -5'
1643 3' -51.4 NC_001347.2 + 110514 0.66 0.99652
Target:  5'- ---aGcCAGCGGcgcGGCGGCGAagaaaaucgGCCGCg -3'
miRNA:   3'- aaugCuGUUGCUa--CUGCCGCU---------UGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.