miRNA display CGI


Results 1 - 20 of 198 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1643 3' -51.4 NC_001347.2 + 777 0.66 0.997483
Target:  5'- -cGCGGCAcacggGCGAcGAaGGCGu-CCGCg -3'
miRNA:   3'- aaUGCUGU-----UGCUaCUgCCGCuuGGCG- -5'
1643 3' -51.4 NC_001347.2 + 1027 0.69 0.975968
Target:  5'- cUACGACGACGccGggccACGGCGuccACCGg -3'
miRNA:   3'- aAUGCUGUUGCuaC----UGCCGCu--UGGCg -5'
1643 3' -51.4 NC_001347.2 + 1590 0.67 0.995271
Target:  5'- -cACGGCGcggGCGAgGugGuGCGGcuguACCGCu -3'
miRNA:   3'- aaUGCUGU---UGCUaCugC-CGCU----UGGCG- -5'
1643 3' -51.4 NC_001347.2 + 1706 0.77 0.716055
Target:  5'- -gGCGACGGCGcucgGACGG-GAGCUGCg -3'
miRNA:   3'- aaUGCUGUUGCua--CUGCCgCUUGGCG- -5'
1643 3' -51.4 NC_001347.2 + 1976 0.76 0.752307
Target:  5'- -gACGGCGGCGggGacgacgucccgccaGCGGCGAGCgGCa -3'
miRNA:   3'- aaUGCUGUUGCuaC--------------UGCCGCUUGgCG- -5'
1643 3' -51.4 NC_001347.2 + 2182 0.67 0.995271
Target:  5'- -gGCGcCGACGGUGAUGGUGggUn-- -3'
miRNA:   3'- aaUGCuGUUGCUACUGCCGCuuGgcg -5'
1643 3' -51.4 NC_001347.2 + 2204 0.76 0.773204
Target:  5'- --uCGACAGCGAUGGCggguccGGCGGcgucggggaccguGCCGCg -3'
miRNA:   3'- aauGCUGUUGCUACUG------CCGCU-------------UGGCG- -5'
1643 3' -51.4 NC_001347.2 + 2484 0.69 0.975968
Target:  5'- -cGCGcGCcGCGcugugGGCGcGCGAGCCGCa -3'
miRNA:   3'- aaUGC-UGuUGCua---CUGC-CGCUUGGCG- -5'
1643 3' -51.4 NC_001347.2 + 4303 0.67 0.995935
Target:  5'- -aACGACGuagACGAUGAacCGuaCGAAUCGCg -3'
miRNA:   3'- aaUGCUGU---UGCUACU--GCc-GCUUGGCG- -5'
1643 3' -51.4 NC_001347.2 + 5560 0.68 0.986229
Target:  5'- --cCGGCAaguugcGCGGUGGgGGCGugccCCGCa -3'
miRNA:   3'- aauGCUGU------UGCUACUgCCGCuu--GGCG- -5'
1643 3' -51.4 NC_001347.2 + 7825 0.79 0.61444
Target:  5'- -gGCGugAcgaagcugguACGGUGGCGGCGGACUGUc -3'
miRNA:   3'- aaUGCugU----------UGCUACUGCCGCUUGGCG- -5'
1643 3' -51.4 NC_001347.2 + 7880 0.69 0.978369
Target:  5'- -aACGGCGGuagUGAccagguggucagUGGCGGCGAcaagGCCGCc -3'
miRNA:   3'- aaUGCUGUU---GCU------------ACUGCCGCU----UGGCG- -5'
1643 3' -51.4 NC_001347.2 + 7956 0.8 0.562604
Target:  5'- gUGCGACuGACGGUGGCGGCGGcagaccaacaugcGCCGa -3'
miRNA:   3'- aAUGCUG-UUGCUACUGCCGCU-------------UGGCg -5'
1643 3' -51.4 NC_001347.2 + 8007 0.67 0.995744
Target:  5'- -gACGGC-GCGAUccaccuuggaagugGACGGCGAuaaCGCc -3'
miRNA:   3'- aaUGCUGuUGCUA--------------CUGCCGCUug-GCG- -5'
1643 3' -51.4 NC_001347.2 + 12618 0.76 0.764723
Target:  5'- -cAUGAUAAUGGgugugGugGGCGAAUCGCu -3'
miRNA:   3'- aaUGCUGUUGCUa----CugCCGCUUGGCG- -5'
1643 3' -51.4 NC_001347.2 + 14014 0.66 0.997034
Target:  5'- --uCGGCGGCcggGGCuGUGAACCGCu -3'
miRNA:   3'- aauGCUGUUGcuaCUGcCGCUUGGCG- -5'
1643 3' -51.4 NC_001347.2 + 15637 0.66 0.997034
Target:  5'- -cGCGAgGGCGcgGAgcgGGUGAuuACCGCc -3'
miRNA:   3'- aaUGCUgUUGCuaCUg--CCGCU--UGGCG- -5'
1643 3' -51.4 NC_001347.2 + 16864 0.66 0.998213
Target:  5'- cUGCGuACAcauggGCGA-GGCGGCGcguCUGCa -3'
miRNA:   3'- aAUGC-UGU-----UGCUaCUGCCGCuu-GGCG- -5'
1643 3' -51.4 NC_001347.2 + 19134 0.67 0.994523
Target:  5'- aUGCGGCGuCGAauuaccgGGCGGCGAuaGCaGCg -3'
miRNA:   3'- aAUGCUGUuGCUa------CUGCCGCU--UGgCG- -5'
1643 3' -51.4 NC_001347.2 + 19168 0.66 0.997034
Target:  5'- -gACGAgGACGAgaGCGGCcgcccccggaGAAUCGCc -3'
miRNA:   3'- aaUGCUgUUGCUacUGCCG----------CUUGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.