miRNA display CGI


Results 1 - 20 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1643 5' -52.8 NC_001347.2 + 175045 0.66 0.996369
Target:  5'- uGGUGAacgagagCGGCGcCGUCUUCGgcgUGCa -3'
miRNA:   3'- gCCGCUaa-----GCUGC-GUAGAAGCa--GCGg -5'
1643 5' -52.8 NC_001347.2 + 75748 0.66 0.996369
Target:  5'- uGGUGGUaucaUCGuccuggaaaaACGcCGUCUcgUCGUUGCCg -3'
miRNA:   3'- gCCGCUA----AGC----------UGC-GUAGA--AGCAGCGG- -5'
1643 5' -52.8 NC_001347.2 + 225528 0.66 0.996369
Target:  5'- gGGCGAaUCGGC-CggCUggUCGUCGgCg -3'
miRNA:   3'- gCCGCUaAGCUGcGuaGA--AGCAGCgG- -5'
1643 5' -52.8 NC_001347.2 + 153076 0.66 0.995779
Target:  5'- aCGGCGAgaugUCGAgGCAgg--UGUgcUGCCg -3'
miRNA:   3'- -GCCGCUa---AGCUgCGUagaaGCA--GCGG- -5'
1643 5' -52.8 NC_001347.2 + 153046 0.66 0.995779
Target:  5'- aGGCGAU---GCGCGagacCUgcUCGUUGCCg -3'
miRNA:   3'- gCCGCUAagcUGCGUa---GA--AGCAGCGG- -5'
1643 5' -52.8 NC_001347.2 + 127987 0.66 0.995779
Target:  5'- aCGGCuAUUUcAUGCAUCgccgUCuGUUGCCg -3'
miRNA:   3'- -GCCGcUAAGcUGCGUAGa---AG-CAGCGG- -5'
1643 5' -52.8 NC_001347.2 + 143379 0.66 0.995111
Target:  5'- aGGUGGUggcgcagaaUCGuACGCAgagUUCGUUGCUg -3'
miRNA:   3'- gCCGCUA---------AGC-UGCGUag-AAGCAGCGG- -5'
1643 5' -52.8 NC_001347.2 + 158105 0.66 0.995111
Target:  5'- gCGGCGGccucaUCGGCaGCGUCaUCGaccUGCCg -3'
miRNA:   3'- -GCCGCUa----AGCUG-CGUAGaAGCa--GCGG- -5'
1643 5' -52.8 NC_001347.2 + 151662 0.66 0.995111
Target:  5'- -cGCGGUUucUGGCGUAUCUUaCGcCGCUu -3'
miRNA:   3'- gcCGCUAA--GCUGCGUAGAA-GCaGCGG- -5'
1643 5' -52.8 NC_001347.2 + 158369 0.66 0.995111
Target:  5'- gGGUGGUgCGgcaGCGCGUCUacgagcUCGUCuCCg -3'
miRNA:   3'- gCCGCUAaGC---UGCGUAGA------AGCAGcGG- -5'
1643 5' -52.8 NC_001347.2 + 210514 0.66 0.995111
Target:  5'- aCGGCGuUUCGcCGCGUCaugacCGaCGCUg -3'
miRNA:   3'- -GCCGCuAAGCuGCGUAGaa---GCaGCGG- -5'
1643 5' -52.8 NC_001347.2 + 222786 0.66 0.995111
Target:  5'- uCGGCaugUCGGCcgacaaaucgcaGCuGUCUUCGcCGCCg -3'
miRNA:   3'- -GCCGcuaAGCUG------------CG-UAGAAGCaGCGG- -5'
1643 5' -52.8 NC_001347.2 + 15614 0.66 0.994361
Target:  5'- uGGUGA--CGACGCGUUcgUCGaCGCg -3'
miRNA:   3'- gCCGCUaaGCUGCGUAGa-AGCaGCGg -5'
1643 5' -52.8 NC_001347.2 + 163312 0.66 0.994361
Target:  5'- gCGGCGAcUCGuCGCG-CgccaGUCGCa -3'
miRNA:   3'- -GCCGCUaAGCuGCGUaGaag-CAGCGg -5'
1643 5' -52.8 NC_001347.2 + 88909 0.66 0.994036
Target:  5'- aCGGCGucgUCGACcuccagguccaaAUCgcaCGUCGCCg -3'
miRNA:   3'- -GCCGCua-AGCUGcg----------UAGaa-GCAGCGG- -5'
1643 5' -52.8 NC_001347.2 + 168314 0.66 0.993782
Target:  5'- gCGGCGcucggUCGACGCGUUguuacuggcgaucaaGUcCGCCg -3'
miRNA:   3'- -GCCGCua---AGCUGCGUAGaag------------CA-GCGG- -5'
1643 5' -52.8 NC_001347.2 + 190103 0.66 0.99352
Target:  5'- aCGGUGGcuUUCGAC-Cua--UCGUCGCCc -3'
miRNA:   3'- -GCCGCU--AAGCUGcGuagaAGCAGCGG- -5'
1643 5' -52.8 NC_001347.2 + 141747 0.66 0.99352
Target:  5'- aGGUGcuagUCcGCGguUC-UCGUCGCCc -3'
miRNA:   3'- gCCGCua--AGcUGCguAGaAGCAGCGG- -5'
1643 5' -52.8 NC_001347.2 + 198085 0.67 0.991539
Target:  5'- gCGGCGGUcgCGACGgugacgGUCccgcUCGUCGCg -3'
miRNA:   3'- -GCCGCUAa-GCUGCg-----UAGa---AGCAGCGg -5'
1643 5' -52.8 NC_001347.2 + 90222 0.67 0.989106
Target:  5'- aCGGCGuggCGGCGuCGUUUUucggagcgCGUCGUCu -3'
miRNA:   3'- -GCCGCuaaGCUGC-GUAGAA--------GCAGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.