miRNA display CGI


Results 1 - 20 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1643 5' -52.8 NC_001347.2 + 129291 1.13 0.005904
Target:  5'- gCGGCGAUUCGACGCAUCUUCGUCGCCg -3'
miRNA:   3'- -GCCGCUAAGCUGCGUAGAAGCAGCGG- -5'
1643 5' -52.8 NC_001347.2 + 198983 0.8 0.496449
Target:  5'- gCGGCGAUUCGGgcgugccgcgaugcCGCAgcUCUUCGUCcaGCCg -3'
miRNA:   3'- -GCCGCUAAGCU--------------GCGU--AGAAGCAG--CGG- -5'
1643 5' -52.8 NC_001347.2 + 86254 0.77 0.676539
Target:  5'- uCGGCGAUcUCGGCGCGcgaagCUUCGgcggcgUGCCg -3'
miRNA:   3'- -GCCGCUA-AGCUGCGUa----GAAGCa-----GCGG- -5'
1643 5' -52.8 NC_001347.2 + 37347 0.75 0.762564
Target:  5'- aCGGCaAUUCGuCGUagguaggAUCUUCGUCGUCa -3'
miRNA:   3'- -GCCGcUAAGCuGCG-------UAGAAGCAGCGG- -5'
1643 5' -52.8 NC_001347.2 + 163365 0.75 0.769957
Target:  5'- aCGGCGuugaugagucgcaGACGCGUCUguUCGUCGCg -3'
miRNA:   3'- -GCCGCuaag---------CUGCGUAGA--AGCAGCGg -5'
1643 5' -52.8 NC_001347.2 + 165580 0.75 0.772711
Target:  5'- -cGCGAcuccaggCGGCGCGgcaCUUCGUCGCCc -3'
miRNA:   3'- gcCGCUaa-----GCUGCGUa--GAAGCAGCGG- -5'
1643 5' -52.8 NC_001347.2 + 39052 0.74 0.81684
Target:  5'- gCGGCGAcagUUGACGCAggucCGUCGCg -3'
miRNA:   3'- -GCCGCUa--AGCUGCGUagaaGCAGCGg -5'
1643 5' -52.8 NC_001347.2 + 156680 0.73 0.85697
Target:  5'- gCGGCGggUCGugGCggCUgUGUCGUUg -3'
miRNA:   3'- -GCCGCuaAGCugCGuaGAaGCAGCGG- -5'
1643 5' -52.8 NC_001347.2 + 89752 0.72 0.87877
Target:  5'- gCGGCG--UCGGCGCAgggaaUUCGUaGCCg -3'
miRNA:   3'- -GCCGCuaAGCUGCGUag---AAGCAgCGG- -5'
1643 5' -52.8 NC_001347.2 + 21640 0.71 0.92742
Target:  5'- aGGCcuuugUCGGCGCGgcUCUUC-UCGCCc -3'
miRNA:   3'- gCCGcua--AGCUGCGU--AGAAGcAGCGG- -5'
1643 5' -52.8 NC_001347.2 + 222421 0.71 0.937321
Target:  5'- aGGCG--UCGcCGCGUCUcguUCGUCgagGCCg -3'
miRNA:   3'- gCCGCuaAGCuGCGUAGA---AGCAG---CGG- -5'
1643 5' -52.8 NC_001347.2 + 168930 0.71 0.937321
Target:  5'- aGGCGcucaCGGCGCGuuUCUUCGU-GCCc -3'
miRNA:   3'- gCCGCuaa-GCUGCGU--AGAAGCAgCGG- -5'
1643 5' -52.8 NC_001347.2 + 142397 0.7 0.941931
Target:  5'- aGGUGcacgaccugUCGGCGC-UCUUCG-CGCCc -3'
miRNA:   3'- gCCGCua-------AGCUGCGuAGAAGCaGCGG- -5'
1643 5' -52.8 NC_001347.2 + 193112 0.7 0.946314
Target:  5'- uCGGCGGccaCGGCGUcuuccUCcucgUCGUCGCCg -3'
miRNA:   3'- -GCCGCUaa-GCUGCGu----AGa---AGCAGCGG- -5'
1643 5' -52.8 NC_001347.2 + 5771 0.7 0.946314
Target:  5'- aCGGUGuaacCGcCGCAUCUgUCGcCGCCa -3'
miRNA:   3'- -GCCGCuaa-GCuGCGUAGA-AGCaGCGG- -5'
1643 5' -52.8 NC_001347.2 + 21340 0.7 0.954413
Target:  5'- uGGCGGUaUGGCuGCgcgccuccGUCcUCGUCGCCu -3'
miRNA:   3'- gCCGCUAaGCUG-CG--------UAGaAGCAGCGG- -5'
1643 5' -52.8 NC_001347.2 + 39611 0.7 0.954413
Target:  5'- -cGCGGUUUagacacgcgGACGC--CUUCGUCGCCc -3'
miRNA:   3'- gcCGCUAAG---------CUGCGuaGAAGCAGCGG- -5'
1643 5' -52.8 NC_001347.2 + 161655 0.7 0.954413
Target:  5'- gCGGCG--UgGACGCgccGUUggCGUCGCCu -3'
miRNA:   3'- -GCCGCuaAgCUGCG---UAGaaGCAGCGG- -5'
1643 5' -52.8 NC_001347.2 + 38429 0.7 0.954413
Target:  5'- gCGGCGAcgUCGucccCGCcgccGUCccCGUCGCCg -3'
miRNA:   3'- -GCCGCUa-AGCu---GCG----UAGaaGCAGCGG- -5'
1643 5' -52.8 NC_001347.2 + 32293 0.7 0.958134
Target:  5'- uGGUagcuaccUUgGugGCGUCUaUCGUCGCCa -3'
miRNA:   3'- gCCGcu-----AAgCugCGUAGA-AGCAGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.