miRNA display CGI


Results 21 - 40 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1643 5' -52.8 NC_001347.2 + 32293 0.7 0.958134
Target:  5'- uGGUagcuaccUUgGugGCGUCUaUCGUCGCCa -3'
miRNA:   3'- gCCGcu-----AAgCugCGUAGA-AGCAGCGG- -5'
1643 5' -52.8 NC_001347.2 + 174237 0.7 0.958134
Target:  5'- gGGCG-UUCGGacgaccucCGCGUCggUCGcCGCCu -3'
miRNA:   3'- gCCGCuAAGCU--------GCGUAGa-AGCaGCGG- -5'
1643 5' -52.8 NC_001347.2 + 188030 0.69 0.961642
Target:  5'- gCGGCGGUUCGGC-CuUC-UCGUCGgUa -3'
miRNA:   3'- -GCCGCUAAGCUGcGuAGaAGCAGCgG- -5'
1643 5' -52.8 NC_001347.2 + 94326 0.69 0.964298
Target:  5'- aCGGCGuccUCGGCGuCGUCggaggccggugCGUCGUCc -3'
miRNA:   3'- -GCCGCua-AGCUGC-GUAGaa---------GCAGCGG- -5'
1643 5' -52.8 NC_001347.2 + 139100 0.69 0.964941
Target:  5'- aGGCGGauUUCGGCGUcUCUgugCGcaCGCCu -3'
miRNA:   3'- gCCGCU--AAGCUGCGuAGAa--GCa-GCGG- -5'
1643 5' -52.8 NC_001347.2 + 24982 0.69 0.964941
Target:  5'- -cGCGAUgUGGCGCAUa--CGUCGCUa -3'
miRNA:   3'- gcCGCUAaGCUGCGUAgaaGCAGCGG- -5'
1643 5' -52.8 NC_001347.2 + 93980 0.69 0.968035
Target:  5'- aCGGUGAUUCGugGU-----CGUgGCCa -3'
miRNA:   3'- -GCCGCUAAGCugCGuagaaGCAgCGG- -5'
1643 5' -52.8 NC_001347.2 + 226981 0.69 0.968035
Target:  5'- cCGGCGg--CGgacACGCuccUCUcCGUCGCCg -3'
miRNA:   3'- -GCCGCuaaGC---UGCGu--AGAaGCAGCGG- -5'
1643 5' -52.8 NC_001347.2 + 16876 0.69 0.970083
Target:  5'- gGGCGAggCGGCGCGUCUgcacuuuaccauguUCGacagCGgCg -3'
miRNA:   3'- gCCGCUaaGCUGCGUAGA--------------AGCa---GCgG- -5'
1643 5' -52.8 NC_001347.2 + 4955 0.69 0.973633
Target:  5'- aCGGUGGUUUGACGUgguAUUgacgUUCGUC-CCa -3'
miRNA:   3'- -GCCGCUAAGCUGCG---UAG----AAGCAGcGG- -5'
1643 5' -52.8 NC_001347.2 + 126019 0.69 0.973633
Target:  5'- gCGGCGGgu-GGCGCccGUCUUCGcCGUg -3'
miRNA:   3'- -GCCGCUaagCUGCG--UAGAAGCaGCGg -5'
1643 5' -52.8 NC_001347.2 + 88253 0.68 0.976148
Target:  5'- cCGGUGAagagagcgCGGCGUAcgCUggucaCGUCGCCg -3'
miRNA:   3'- -GCCGCUaa------GCUGCGUa-GAa----GCAGCGG- -5'
1643 5' -52.8 NC_001347.2 + 173546 0.68 0.978483
Target:  5'- gCGGCGGUgguggCGGCaGCcucUCUUCGcUgGCCa -3'
miRNA:   3'- -GCCGCUAa----GCUG-CGu--AGAAGC-AgCGG- -5'
1643 5' -52.8 NC_001347.2 + 172132 0.68 0.980645
Target:  5'- aCGaCGAggUGGCGCAUCUguggggCGUgaCGCCg -3'
miRNA:   3'- -GCcGCUaaGCUGCGUAGAa-----GCA--GCGG- -5'
1643 5' -52.8 NC_001347.2 + 106027 0.68 0.98264
Target:  5'- gCGGCug-UCGGCGC-UUUUCGUCauGCUg -3'
miRNA:   3'- -GCCGcuaAGCUGCGuAGAAGCAG--CGG- -5'
1643 5' -52.8 NC_001347.2 + 126451 0.68 0.98264
Target:  5'- gGGCGAgUUCG-CGCGUCUgcuacugggC-UCGCCc -3'
miRNA:   3'- gCCGCU-AAGCuGCGUAGAa--------GcAGCGG- -5'
1643 5' -52.8 NC_001347.2 + 8354 0.68 0.984476
Target:  5'- aGGUGcguUUCGGCGCcgUgcaGUUGCCg -3'
miRNA:   3'- gCCGCu--AAGCUGCGuaGaagCAGCGG- -5'
1643 5' -52.8 NC_001347.2 + 8033 0.68 0.984476
Target:  5'- aCGGCGAUa--ACGCcacg-CGUCGCCa -3'
miRNA:   3'- -GCCGCUAagcUGCGuagaaGCAGCGG- -5'
1643 5' -52.8 NC_001347.2 + 31393 0.68 0.984476
Target:  5'- aGGCGGUggCuGCGCcUCcUCGUCgGCCu -3'
miRNA:   3'- gCCGCUAa-GcUGCGuAGaAGCAG-CGG- -5'
1643 5' -52.8 NC_001347.2 + 16686 0.68 0.984476
Target:  5'- uGGUGAUUgucaaGuCGCAUCUggacCGcUCGCCg -3'
miRNA:   3'- gCCGCUAAg----CuGCGUAGAa---GC-AGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.