miRNA display CGI


Results 21 - 40 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1643 5' -52.8 NC_001347.2 + 90222 0.67 0.989106
Target:  5'- aCGGCGuggCGGCGuCGUUUUucggagcgCGUCGUCu -3'
miRNA:   3'- -GCCGCuaaGCUGC-GUAGAA--------GCAGCGG- -5'
1643 5' -52.8 NC_001347.2 + 1339 0.67 0.989106
Target:  5'- aCGGCGugggcgCGACggaccuGCGUCaacUGUCGCCg -3'
miRNA:   3'- -GCCGCuaa---GCUG------CGUAGaa-GCAGCGG- -5'
1643 5' -52.8 NC_001347.2 + 5803 0.67 0.988971
Target:  5'- uGGCGGcccuccgUUCGGCucGgGUCgugggUCGUCGCUg -3'
miRNA:   3'- gCCGCU-------AAGCUG--CgUAGa----AGCAGCGG- -5'
1643 5' -52.8 NC_001347.2 + 15947 0.67 0.987701
Target:  5'- gGGCGAcuUUCaGgGCAUCUUCagUGCCa -3'
miRNA:   3'- gCCGCU--AAGcUgCGUAGAAGcaGCGG- -5'
1643 5' -52.8 NC_001347.2 + 134549 0.67 0.987701
Target:  5'- aGGCuc-UCGACGCcauuuUCUcUCGUcCGCCa -3'
miRNA:   3'- gCCGcuaAGCUGCGu----AGA-AGCA-GCGG- -5'
1643 5' -52.8 NC_001347.2 + 210216 0.67 0.987553
Target:  5'- uGGUGAUUCGGuacguucugcgucCGCGUC-UCGUgcauccucUGCCg -3'
miRNA:   3'- gCCGCUAAGCU-------------GCGUAGaAGCA--------GCGG- -5'
1643 5' -52.8 NC_001347.2 + 156870 0.67 0.98616
Target:  5'- uCGGCGAggggugUCGACcCAUCacCGUcaucCGCCg -3'
miRNA:   3'- -GCCGCUa-----AGCUGcGUAGaaGCA----GCGG- -5'
1643 5' -52.8 NC_001347.2 + 153259 0.67 0.98616
Target:  5'- aCGGCGGUUCGcCGUGg--UUGUUgGCCg -3'
miRNA:   3'- -GCCGCUAAGCuGCGUagaAGCAG-CGG- -5'
1643 5' -52.8 NC_001347.2 + 200940 0.67 0.98616
Target:  5'- uGGCccgUCGACcuuaucccCAUCgUCGUCGCCu -3'
miRNA:   3'- gCCGcuaAGCUGc-------GUAGaAGCAGCGG- -5'
1643 5' -52.8 NC_001347.2 + 196298 0.67 0.985999
Target:  5'- aCGGCGGUaaccaCGACgguaaccacgacgGCAaugaccacuccUCUUUGUCGCCc -3'
miRNA:   3'- -GCCGCUAa----GCUG-------------CGU-----------AGAAGCAGCGG- -5'
1643 5' -52.8 NC_001347.2 + 8354 0.68 0.984476
Target:  5'- aGGUGcguUUCGGCGCcgUgcaGUUGCCg -3'
miRNA:   3'- gCCGCu--AAGCUGCGuaGaagCAGCGG- -5'
1643 5' -52.8 NC_001347.2 + 8033 0.68 0.984476
Target:  5'- aCGGCGAUa--ACGCcacg-CGUCGCCa -3'
miRNA:   3'- -GCCGCUAagcUGCGuagaaGCAGCGG- -5'
1643 5' -52.8 NC_001347.2 + 31393 0.68 0.984476
Target:  5'- aGGCGGUggCuGCGCcUCcUCGUCgGCCu -3'
miRNA:   3'- gCCGCUAa-GcUGCGuAGaAGCAG-CGG- -5'
1643 5' -52.8 NC_001347.2 + 16686 0.68 0.984476
Target:  5'- uGGUGAUUgucaaGuCGCAUCUggacCGcUCGCCg -3'
miRNA:   3'- gCCGCUAAg----CuGCGUAGAa---GC-AGCGG- -5'
1643 5' -52.8 NC_001347.2 + 184222 0.68 0.984476
Target:  5'- gGGCGG-UCGcuaGCGUGUCgcagCGuUCGCCg -3'
miRNA:   3'- gCCGCUaAGC---UGCGUAGaa--GC-AGCGG- -5'
1643 5' -52.8 NC_001347.2 + 208056 0.68 0.984476
Target:  5'- gCGGCGuucgUUGGCGCcgCUgccgCGUCGg- -3'
miRNA:   3'- -GCCGCua--AGCUGCGuaGAa---GCAGCgg -5'
1643 5' -52.8 NC_001347.2 + 71109 0.68 0.984476
Target:  5'- aCGGUGA--CGACGUAUgUcUGUCGUCu -3'
miRNA:   3'- -GCCGCUaaGCUGCGUAgAaGCAGCGG- -5'
1643 5' -52.8 NC_001347.2 + 126451 0.68 0.98264
Target:  5'- gGGCGAgUUCG-CGCGUCUgcuacugggC-UCGCCc -3'
miRNA:   3'- gCCGCU-AAGCuGCGUAGAa--------GcAGCGG- -5'
1643 5' -52.8 NC_001347.2 + 106027 0.68 0.98264
Target:  5'- gCGGCug-UCGGCGC-UUUUCGUCauGCUg -3'
miRNA:   3'- -GCCGcuaAGCUGCGuAGAAGCAG--CGG- -5'
1643 5' -52.8 NC_001347.2 + 172132 0.68 0.980645
Target:  5'- aCGaCGAggUGGCGCAUCUguggggCGUgaCGCCg -3'
miRNA:   3'- -GCcGCUaaGCUGCGUAGAa-----GCA--GCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.