miRNA display CGI


Results 1 - 20 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1643 5' -52.8 NC_001347.2 + 1339 0.67 0.989106
Target:  5'- aCGGCGugggcgCGACggaccuGCGUCaacUGUCGCCg -3'
miRNA:   3'- -GCCGCuaa---GCUG------CGUAGaa-GCAGCGG- -5'
1643 5' -52.8 NC_001347.2 + 4955 0.69 0.973633
Target:  5'- aCGGUGGUUUGACGUgguAUUgacgUUCGUC-CCa -3'
miRNA:   3'- -GCCGCUAAGCUGCG---UAG----AAGCAGcGG- -5'
1643 5' -52.8 NC_001347.2 + 5771 0.7 0.946314
Target:  5'- aCGGUGuaacCGcCGCAUCUgUCGcCGCCa -3'
miRNA:   3'- -GCCGCuaa-GCuGCGUAGA-AGCaGCGG- -5'
1643 5' -52.8 NC_001347.2 + 5803 0.67 0.988971
Target:  5'- uGGCGGcccuccgUUCGGCucGgGUCgugggUCGUCGCUg -3'
miRNA:   3'- gCCGCU-------AAGCUG--CgUAGa----AGCAGCGG- -5'
1643 5' -52.8 NC_001347.2 + 8033 0.68 0.984476
Target:  5'- aCGGCGAUa--ACGCcacg-CGUCGCCa -3'
miRNA:   3'- -GCCGCUAagcUGCGuagaaGCAGCGG- -5'
1643 5' -52.8 NC_001347.2 + 8354 0.68 0.984476
Target:  5'- aGGUGcguUUCGGCGCcgUgcaGUUGCCg -3'
miRNA:   3'- gCCGCu--AAGCUGCGuaGaagCAGCGG- -5'
1643 5' -52.8 NC_001347.2 + 15614 0.66 0.994361
Target:  5'- uGGUGA--CGACGCGUUcgUCGaCGCg -3'
miRNA:   3'- gCCGCUaaGCUGCGUAGa-AGCaGCGg -5'
1643 5' -52.8 NC_001347.2 + 15947 0.67 0.987701
Target:  5'- gGGCGAcuUUCaGgGCAUCUUCagUGCCa -3'
miRNA:   3'- gCCGCU--AAGcUgCGUAGAAGcaGCGG- -5'
1643 5' -52.8 NC_001347.2 + 16686 0.68 0.984476
Target:  5'- uGGUGAUUgucaaGuCGCAUCUggacCGcUCGCCg -3'
miRNA:   3'- gCCGCUAAg----CuGCGUAGAa---GC-AGCGG- -5'
1643 5' -52.8 NC_001347.2 + 16876 0.69 0.970083
Target:  5'- gGGCGAggCGGCGCGUCUgcacuuuaccauguUCGacagCGgCg -3'
miRNA:   3'- gCCGCUaaGCUGCGUAGA--------------AGCa---GCgG- -5'
1643 5' -52.8 NC_001347.2 + 21340 0.7 0.954413
Target:  5'- uGGCGGUaUGGCuGCgcgccuccGUCcUCGUCGCCu -3'
miRNA:   3'- gCCGCUAaGCUG-CG--------UAGaAGCAGCGG- -5'
1643 5' -52.8 NC_001347.2 + 21640 0.71 0.92742
Target:  5'- aGGCcuuugUCGGCGCGgcUCUUC-UCGCCc -3'
miRNA:   3'- gCCGcua--AGCUGCGU--AGAAGcAGCGG- -5'
1643 5' -52.8 NC_001347.2 + 24982 0.69 0.964941
Target:  5'- -cGCGAUgUGGCGCAUa--CGUCGCUa -3'
miRNA:   3'- gcCGCUAaGCUGCGUAgaaGCAGCGG- -5'
1643 5' -52.8 NC_001347.2 + 31393 0.68 0.984476
Target:  5'- aGGCGGUggCuGCGCcUCcUCGUCgGCCu -3'
miRNA:   3'- gCCGCUAa-GcUGCGuAGaAGCAG-CGG- -5'
1643 5' -52.8 NC_001347.2 + 32293 0.7 0.958134
Target:  5'- uGGUagcuaccUUgGugGCGUCUaUCGUCGCCa -3'
miRNA:   3'- gCCGcu-----AAgCugCGUAGA-AGCAGCGG- -5'
1643 5' -52.8 NC_001347.2 + 37347 0.75 0.762564
Target:  5'- aCGGCaAUUCGuCGUagguaggAUCUUCGUCGUCa -3'
miRNA:   3'- -GCCGcUAAGCuGCG-------UAGAAGCAGCGG- -5'
1643 5' -52.8 NC_001347.2 + 38429 0.7 0.954413
Target:  5'- gCGGCGAcgUCGucccCGCcgccGUCccCGUCGCCg -3'
miRNA:   3'- -GCCGCUa-AGCu---GCG----UAGaaGCAGCGG- -5'
1643 5' -52.8 NC_001347.2 + 39052 0.74 0.81684
Target:  5'- gCGGCGAcagUUGACGCAggucCGUCGCg -3'
miRNA:   3'- -GCCGCUa--AGCUGCGUagaaGCAGCGg -5'
1643 5' -52.8 NC_001347.2 + 39611 0.7 0.954413
Target:  5'- -cGCGGUUUagacacgcgGACGC--CUUCGUCGCCc -3'
miRNA:   3'- gcCGCUAAG---------CUGCGuaGAAGCAGCGG- -5'
1643 5' -52.8 NC_001347.2 + 71109 0.68 0.984476
Target:  5'- aCGGUGA--CGACGUAUgUcUGUCGUCu -3'
miRNA:   3'- -GCCGCUaaGCUGCGUAgAaGCAGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.