miRNA display CGI


Results 1 - 20 of 146 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16432 3' -54.7 NC_004084.1 + 52989 0.65 0.818023
Target:  5'- cCGAUCGCGAUCcauucuucaccgauGACGaggUCaGACU-CCUCg -3'
miRNA:   3'- -GCUAGCGCUAG--------------CUGC---AG-CUGGuGGAG- -5'
16432 3' -54.7 NC_004084.1 + 5165 0.66 0.811586
Target:  5'- cCGAUCuCG-UCGcCGUCGACgACCg- -3'
miRNA:   3'- -GCUAGcGCuAGCuGCAGCUGgUGGag -5'
16432 3' -54.7 NC_004084.1 + 4100 0.66 0.811586
Target:  5'- uCGGUgcaGCGucUCGAUGUCGAUCACgaCg -3'
miRNA:   3'- -GCUAg--CGCu-AGCUGCAGCUGGUGgaG- -5'
16432 3' -54.7 NC_004084.1 + 18270 0.66 0.811586
Target:  5'- uCGAaC-CGGUCGACGUUgaggccgaucaGGCCACCgUCg -3'
miRNA:   3'- -GCUaGcGCUAGCUGCAG-----------CUGGUGG-AG- -5'
16432 3' -54.7 NC_004084.1 + 28374 0.66 0.811586
Target:  5'- uCGGUCaGCGuuUCGACGUgcACCAUCUUc -3'
miRNA:   3'- -GCUAG-CGCu-AGCUGCAgcUGGUGGAG- -5'
16432 3' -54.7 NC_004084.1 + 39782 0.66 0.811586
Target:  5'- aGAcgGCGA-CGAgGUCGGCCAaCUCg -3'
miRNA:   3'- gCUagCGCUaGCUgCAGCUGGUgGAG- -5'
16432 3' -54.7 NC_004084.1 + 8760 0.66 0.811586
Target:  5'- --uUCGgaGAUC-AUGUCGACCACCg- -3'
miRNA:   3'- gcuAGCg-CUAGcUGCAGCUGGUGGag -5'
16432 3' -54.7 NC_004084.1 + 29053 0.66 0.811586
Target:  5'- gGAcgCGgGAUCccgGGCGUCGACCAgCg- -3'
miRNA:   3'- gCUa-GCgCUAG---CUGCAGCUGGUgGag -5'
16432 3' -54.7 NC_004084.1 + 38387 0.66 0.811586
Target:  5'- aCGAgaCGCGAUCGuCGuccUCGAgCGCCg- -3'
miRNA:   3'- -GCUa-GCGCUAGCuGC---AGCUgGUGGag -5'
16432 3' -54.7 NC_004084.1 + 47395 0.66 0.810659
Target:  5'- aCGAUCGcCGGauacUCGACugacucaGUCGGCU-CCUCg -3'
miRNA:   3'- -GCUAGC-GCU----AGCUG-------CAGCUGGuGGAG- -5'
16432 3' -54.7 NC_004084.1 + 25370 0.66 0.8088
Target:  5'- gGAUCGaCGugagcgccgagucaGUCGAgGUCGAgCugCUCc -3'
miRNA:   3'- gCUAGC-GC--------------UAGCUgCAGCUgGugGAG- -5'
16432 3' -54.7 NC_004084.1 + 173 0.66 0.803179
Target:  5'- uGGUCGCGAUCGugaaggucccagaagACGUuccgggagcccgcaCGGCCAUCg- -3'
miRNA:   3'- gCUAGCGCUAGC---------------UGCA--------------GCUGGUGGag -5'
16432 3' -54.7 NC_004084.1 + 8228 0.66 0.802236
Target:  5'- aCGGUUGCaGAgggCGACGUCGagacgaucgacGCCGCUg- -3'
miRNA:   3'- -GCUAGCG-CUa--GCUGCAGC-----------UGGUGGag -5'
16432 3' -54.7 NC_004084.1 + 52181 0.66 0.802236
Target:  5'- cCGcGUCGgGAUCGACGcuauccggaaucUCGACCuCgUCg -3'
miRNA:   3'- -GC-UAGCgCUAGCUGC------------AGCUGGuGgAG- -5'
16432 3' -54.7 NC_004084.1 + 41745 0.66 0.802236
Target:  5'- aCGAUCGgGA-CGACGccggCGACgaggACCUCc -3'
miRNA:   3'- -GCUAGCgCUaGCUGCa---GCUGg---UGGAG- -5'
16432 3' -54.7 NC_004084.1 + 37048 0.66 0.802236
Target:  5'- aCGGUCGU---CGAUGUCGAUguUCUCg -3'
miRNA:   3'- -GCUAGCGcuaGCUGCAGCUGguGGAG- -5'
16432 3' -54.7 NC_004084.1 + 50168 0.66 0.802236
Target:  5'- -uGUCGUcagCGGCGUCGAUCGUCUCg -3'
miRNA:   3'- gcUAGCGcuaGCUGCAGCUGGUGGAG- -5'
16432 3' -54.7 NC_004084.1 + 53597 0.66 0.802236
Target:  5'- aCGAUCgGCGAgcuuugaucUCGACGUUGACgaaCugCUg -3'
miRNA:   3'- -GCUAG-CGCU---------AGCUGCAGCUG---GugGAg -5'
16432 3' -54.7 NC_004084.1 + 49297 0.66 0.792715
Target:  5'- aCGGaCGcCGAUCGA-GUCcuuGACCugCUCg -3'
miRNA:   3'- -GCUaGC-GCUAGCUgCAG---CUGGugGAG- -5'
16432 3' -54.7 NC_004084.1 + 57995 0.66 0.792715
Target:  5'- aGGUCGCcGUaGACGcucUCGAUCAUCUCc -3'
miRNA:   3'- gCUAGCGcUAgCUGC---AGCUGGUGGAG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.