miRNA display CGI


Results 1 - 20 of 29 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16432 5' -54.6 NC_004084.1 + 4959 0.66 0.823699
Target:  5'- gCCGGGAgacGACGAcccacGAgGAGaUCGGCg -3'
miRNA:   3'- -GGUCCUac-CUGCUac---CUgCUC-AGCCG- -5'
16432 5' -54.6 NC_004084.1 + 55660 0.66 0.823699
Target:  5'- gCAGGA--GACGAaGGccaucgccgagaGCGAGUCGGa -3'
miRNA:   3'- gGUCCUacCUGCUaCC------------UGCUCAGCCg -5'
16432 5' -54.6 NC_004084.1 + 51127 0.66 0.822798
Target:  5'- uCCAGGAguacgcuUGGGCGAUcccGaACGAGgaGGCg -3'
miRNA:   3'- -GGUCCU-------ACCUGCUA---CcUGCUCagCCG- -5'
16432 5' -54.6 NC_004084.1 + 45945 0.66 0.814606
Target:  5'- uCCuucGGAUGucgaagaACGAUGuGucCGAGUCGGCu -3'
miRNA:   3'- -GGu--CCUACc------UGCUAC-Cu-GCUCAGCCG- -5'
16432 5' -54.6 NC_004084.1 + 9868 0.66 0.805328
Target:  5'- gCGGGAgcc-CGgcGGAaGAGUCGGCg -3'
miRNA:   3'- gGUCCUaccuGCuaCCUgCUCAGCCG- -5'
16432 5' -54.6 NC_004084.1 + 11103 0.66 0.795875
Target:  5'- uCCAuucGAUcGACGucucgucGGACGAGUCGGUc -3'
miRNA:   3'- -GGUc--CUAcCUGCua-----CCUGCUCAGCCG- -5'
16432 5' -54.6 NC_004084.1 + 18404 0.66 0.795875
Target:  5'- uCCAGGc-GGGCGAugugaauuUGGACGGGcUCGa- -3'
miRNA:   3'- -GGUCCuaCCUGCU--------ACCUGCUC-AGCcg -5'
16432 5' -54.6 NC_004084.1 + 14263 0.66 0.786257
Target:  5'- aCCGGGAccaGGugGA-GGuccucgucgucGCGAG-CGGCu -3'
miRNA:   3'- -GGUCCUa--CCugCUaCC-----------UGCUCaGCCG- -5'
16432 5' -54.6 NC_004084.1 + 29045 0.66 0.786257
Target:  5'- uCCAGGAgGGACGcgGGAuccCGGgcGUCGaccaGCg -3'
miRNA:   3'- -GGUCCUaCCUGCuaCCU---GCU--CAGC----CG- -5'
16432 5' -54.6 NC_004084.1 + 2481 0.67 0.776484
Target:  5'- gCgAGGA-GGAUGAU-GACGAcugaaguccaGUCGGCc -3'
miRNA:   3'- -GgUCCUaCCUGCUAcCUGCU----------CAGCCG- -5'
16432 5' -54.6 NC_004084.1 + 10878 0.67 0.756517
Target:  5'- uCCAcuGGccGGAUGAUGG-CGAucGUCGGg -3'
miRNA:   3'- -GGU--CCuaCCUGCUACCuGCU--CAGCCg -5'
16432 5' -54.6 NC_004084.1 + 10563 0.67 0.756517
Target:  5'- cUCGGGGUGGcuguCGAUcGaGACGGGacCGGCc -3'
miRNA:   3'- -GGUCCUACCu---GCUA-C-CUGCUCa-GCCG- -5'
16432 5' -54.6 NC_004084.1 + 27516 0.67 0.746343
Target:  5'- uCCAGGA-GGACcacggcuaccugGAUGGACcGGU-GGCc -3'
miRNA:   3'- -GGUCCUaCCUG------------CUACCUGcUCAgCCG- -5'
16432 5' -54.6 NC_004084.1 + 54560 0.67 0.736058
Target:  5'- gCGGGGuUGGAcaccgagguucCGGUGGAgcCGucGUCGGCg -3'
miRNA:   3'- gGUCCU-ACCU-----------GCUACCU--GCu-CAGCCG- -5'
16432 5' -54.6 NC_004084.1 + 9684 0.67 0.725672
Target:  5'- aCAGGGUGGccCGccGGAgaccgcggUGAGUUGGCc -3'
miRNA:   3'- gGUCCUACCu-GCuaCCU--------GCUCAGCCG- -5'
16432 5' -54.6 NC_004084.1 + 1132 0.68 0.70464
Target:  5'- uCCuGGAUGGcGCGGUuguaGACGAGcUCGGa -3'
miRNA:   3'- -GGuCCUACC-UGCUAc---CUGCUC-AGCCg -5'
16432 5' -54.6 NC_004084.1 + 18155 0.68 0.70464
Target:  5'- gCCGGcGAgUGGACGAUGGA-GA-UCGaGCa -3'
miRNA:   3'- -GGUC-CU-ACCUGCUACCUgCUcAGC-CG- -5'
16432 5' -54.6 NC_004084.1 + 24045 0.68 0.683335
Target:  5'- cCCAGac--GGCGAUGGACGcGGUugCGGCg -3'
miRNA:   3'- -GGUCcuacCUGCUACCUGC-UCA--GCCG- -5'
16432 5' -54.6 NC_004084.1 + 38482 0.68 0.672606
Target:  5'- cCCAaccUGGACGAgcUGGuCGAGaUCGGCc -3'
miRNA:   3'- -GGUccuACCUGCU--ACCuGCUC-AGCCG- -5'
16432 5' -54.6 NC_004084.1 + 5077 0.69 0.661841
Target:  5'- uCCGGGA-GGGCGGUGaGCG-GUCuGCc -3'
miRNA:   3'- -GGUCCUaCCUGCUACcUGCuCAGcCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.