miRNA display CGI


Results 1 - 20 of 102 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16433 3' -58.8 NC_004084.1 + 34700 0.66 0.618219
Target:  5'- gCGCUGGgguguCGUCCuuuCCgggCGUCGCcgguUCGCg -3'
miRNA:   3'- -GCGGCU-----GCAGGu--GGa--GCAGCGc---AGCG- -5'
16433 3' -58.8 NC_004084.1 + 1100 0.66 0.618219
Target:  5'- cCGCUuuguaGGCGUCCcCCUCGUCGaggagGUCc- -3'
miRNA:   3'- -GCGG-----CUGCAGGuGGAGCAGCg----CAGcg -5'
16433 3' -58.8 NC_004084.1 + 46734 0.66 0.618219
Target:  5'- aCGCCguguaGACGUCgCuguCCUCGcCGUagucGUCGCc -3'
miRNA:   3'- -GCGG-----CUGCAG-Gu--GGAGCaGCG----CAGCG- -5'
16433 3' -58.8 NC_004084.1 + 45270 0.66 0.607748
Target:  5'- aCGuUCGGuCGUCCGaaUCGUCGcCGUCGa -3'
miRNA:   3'- -GC-GGCU-GCAGGUggAGCAGC-GCAGCg -5'
16433 3' -58.8 NC_004084.1 + 53168 0.66 0.607748
Target:  5'- gGCCGAUGaCUgACCccagcguguUCGUC-CGUCGCg -3'
miRNA:   3'- gCGGCUGCaGG-UGG---------AGCAGcGCAGCG- -5'
16433 3' -58.8 NC_004084.1 + 5120 0.66 0.607748
Target:  5'- gGCCGAcCGUCgauacaACCUCG--GCGUgGCg -3'
miRNA:   3'- gCGGCU-GCAGg-----UGGAGCagCGCAgCG- -5'
16433 3' -58.8 NC_004084.1 + 14087 0.66 0.607748
Target:  5'- aCGuaGACGUCgAUgUCGUCGUGgcgGCa -3'
miRNA:   3'- -GCggCUGCAGgUGgAGCAGCGCag-CG- -5'
16433 3' -58.8 NC_004084.1 + 17030 0.66 0.606702
Target:  5'- gCGaCCGAgCGUCUgcGCC-CGUCGaugcggugacugaCGUCGCa -3'
miRNA:   3'- -GC-GGCU-GCAGG--UGGaGCAGC-------------GCAGCG- -5'
16433 3' -58.8 NC_004084.1 + 27024 0.66 0.597296
Target:  5'- uCGCCGAUaucggcguaGUCCGCCcCGUCGaguUCGa -3'
miRNA:   3'- -GCGGCUG---------CAGGUGGaGCAGCgc-AGCg -5'
16433 3' -58.8 NC_004084.1 + 14155 0.66 0.597296
Target:  5'- uCGCCGuCGUCgugaagGCCggUCGUCcCGUCGUa -3'
miRNA:   3'- -GCGGCuGCAGg-----UGG--AGCAGcGCAGCG- -5'
16433 3' -58.8 NC_004084.1 + 12858 0.66 0.597296
Target:  5'- cCGUCGGCGuacUCCGCUUCGagGuCcUCGCg -3'
miRNA:   3'- -GCGGCUGC---AGGUGGAGCagC-GcAGCG- -5'
16433 3' -58.8 NC_004084.1 + 5252 0.66 0.597296
Target:  5'- aCGCUGGgGUCagucaucgGCCUCGUCGaCGaCGUc -3'
miRNA:   3'- -GCGGCUgCAGg-------UGGAGCAGC-GCaGCG- -5'
16433 3' -58.8 NC_004084.1 + 28724 0.66 0.597296
Target:  5'- aGCCaggacaGCGUCCGCgaC--CGCGUCGCg -3'
miRNA:   3'- gCGGc-----UGCAGGUGgaGcaGCGCAGCG- -5'
16433 3' -58.8 NC_004084.1 + 28514 0.66 0.597296
Target:  5'- gGCuCGcACGUUCACCUC--UGCGUgGCc -3'
miRNA:   3'- gCG-GC-UGCAGGUGGAGcaGCGCAgCG- -5'
16433 3' -58.8 NC_004084.1 + 29503 0.66 0.58687
Target:  5'- gGCCGACGU-CGCuCUCGggcacaccCGCuUCGCc -3'
miRNA:   3'- gCGGCUGCAgGUG-GAGCa-------GCGcAGCG- -5'
16433 3' -58.8 NC_004084.1 + 8727 0.66 0.58687
Target:  5'- -cUCGGCGUCaC-CCUCGUgGaUGUCGCc -3'
miRNA:   3'- gcGGCUGCAG-GuGGAGCAgC-GCAGCG- -5'
16433 3' -58.8 NC_004084.1 + 41233 0.66 0.58687
Target:  5'- gGCUGACGacaaugugCCucCCUCGccuUCGaCGUCGCc -3'
miRNA:   3'- gCGGCUGCa-------GGu-GGAGC---AGC-GCAGCG- -5'
16433 3' -58.8 NC_004084.1 + 32417 0.66 0.57648
Target:  5'- cCGUCGACGagcUCGCaCUCGUCGCGa--- -3'
miRNA:   3'- -GCGGCUGCa--GGUG-GAGCAGCGCagcg -5'
16433 3' -58.8 NC_004084.1 + 23150 0.66 0.57648
Target:  5'- uCGCCGAcucguccauCGUCCAuCCUgGUCGUcccagaggugGUCGa -3'
miRNA:   3'- -GCGGCU---------GCAGGU-GGAgCAGCG----------CAGCg -5'
16433 3' -58.8 NC_004084.1 + 36726 0.66 0.57648
Target:  5'- uCGCCGACGUCaGCUgUGcUCGCaaCGCa -3'
miRNA:   3'- -GCGGCUGCAGgUGGaGC-AGCGcaGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.