miRNA display CGI


Results 41 - 60 of 102 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16433 3' -58.8 NC_004084.1 + 20995 0.68 0.482683
Target:  5'- cCGCCGcuaucgagauccaaGCGUCCAUCaUCGgccaGCGUCuGCc -3'
miRNA:   3'- -GCGGC--------------UGCAGGUGG-AGCag--CGCAG-CG- -5'
16433 3' -58.8 NC_004084.1 + 38851 0.68 0.456801
Target:  5'- gGUCuggGACGUCguCCUCGUCGagccagaGUUGCg -3'
miRNA:   3'- gCGG---CUGCAGguGGAGCAGCg------CAGCG- -5'
16433 3' -58.8 NC_004084.1 + 57857 0.68 0.475903
Target:  5'- gGCCGGgaaGauccCCGCCUUGUCGCaGUCGa -3'
miRNA:   3'- gCGGCUg--Ca---GGUGGAGCAGCG-CAGCg -5'
16433 3' -58.8 NC_004084.1 + 48392 0.68 0.484629
Target:  5'- cCGUCGACGcggcaucguggCCGCCaucucggagaucuUCGUCGaCGUCGUc -3'
miRNA:   3'- -GCGGCUGCa----------GGUGG-------------AGCAGC-GCAGCG- -5'
16433 3' -58.8 NC_004084.1 + 23362 0.68 0.485603
Target:  5'- gGUCGACGUCgACgUUCGgaUC-CGUCGCg -3'
miRNA:   3'- gCGGCUGCAGgUG-GAGC--AGcGCAGCG- -5'
16433 3' -58.8 NC_004084.1 + 50998 0.68 0.505276
Target:  5'- cCGUCGGCaUCgC-CCUCGUCGuCGaUCGCc -3'
miRNA:   3'- -GCGGCUGcAG-GuGGAGCAGC-GC-AGCG- -5'
16433 3' -58.8 NC_004084.1 + 39583 0.68 0.505276
Target:  5'- uCGUCGACGaggUCCcgggcGCgCUUGUCugGCGUCGCc -3'
miRNA:   3'- -GCGGCUGC---AGG-----UG-GAGCAG--CGCAGCG- -5'
16433 3' -58.8 NC_004084.1 + 36414 0.68 0.495395
Target:  5'- uGUCGAuguuCGUCCGCgCgUCGUCGaCGUaCGCc -3'
miRNA:   3'- gCGGCU----GCAGGUG-G-AGCAGC-GCA-GCG- -5'
16433 3' -58.8 NC_004084.1 + 50931 0.68 0.465347
Target:  5'- gGCCGAcuugcuCGUCuCGCCUucgcCGUCGCcgcucgaGUCGCc -3'
miRNA:   3'- gCGGCU------GCAG-GUGGA----GCAGCG-------CAGCG- -5'
16433 3' -58.8 NC_004084.1 + 9071 0.68 0.485603
Target:  5'- aCGUCGACGaUCACCUCGaCaCGaUCGCc -3'
miRNA:   3'- -GCGGCUGCaGGUGGAGCaGcGC-AGCG- -5'
16433 3' -58.8 NC_004084.1 + 40450 0.68 0.485603
Target:  5'- gCGCCGACGauUCCGCCgUCaUCG-GUUGUu -3'
miRNA:   3'- -GCGGCUGC--AGGUGG-AGcAGCgCAGCG- -5'
16433 3' -58.8 NC_004084.1 + 9383 0.68 0.475903
Target:  5'- uGCCGuccCGUCCcguCCaggaCGUCGUGUCGg -3'
miRNA:   3'- gCGGCu--GCAGGu--GGa---GCAGCGCAGCg -5'
16433 3' -58.8 NC_004084.1 + 26222 0.68 0.475903
Target:  5'- aCGaCUGGC-UCCACCaaccgcuguUCGUCGgGUCGUu -3'
miRNA:   3'- -GC-GGCUGcAGGUGG---------AGCAGCgCAGCG- -5'
16433 3' -58.8 NC_004084.1 + 12750 0.69 0.447406
Target:  5'- uCGUCGACGccgaCCGUCUCGUCGuUGUCGg -3'
miRNA:   3'- -GCGGCUGCa---GGUGGAGCAGC-GCAGCg -5'
16433 3' -58.8 NC_004084.1 + 3071 0.69 0.447406
Target:  5'- uCGUCGACGggCCG-CUCGUCGaCGUgCGUu -3'
miRNA:   3'- -GCGGCUGCa-GGUgGAGCAGC-GCA-GCG- -5'
16433 3' -58.8 NC_004084.1 + 28160 0.69 0.438118
Target:  5'- gGCUGGaauaGUCCGuCCUCGgccuguUCGaCGUCGCc -3'
miRNA:   3'- gCGGCUg---CAGGU-GGAGC------AGC-GCAGCG- -5'
16433 3' -58.8 NC_004084.1 + 56931 0.69 0.410936
Target:  5'- gGgCGACGUCUACCaggaggUCGUCGa-UCGCc -3'
miRNA:   3'- gCgGCUGCAGGUGG------AGCAGCgcAGCG- -5'
16433 3' -58.8 NC_004084.1 + 28381 0.69 0.410936
Target:  5'- gCGUuuCGACGUgCACCaUCuUCGCGUCGa -3'
miRNA:   3'- -GCG--GCUGCAgGUGG-AGcAGCGCAGCg -5'
16433 3' -58.8 NC_004084.1 + 28091 0.69 0.405626
Target:  5'- uCGCCGACGgucaacgguucggggUgCGCCUCGacgagCGCGUCa- -3'
miRNA:   3'- -GCGGCUGC---------------AgGUGGAGCa----GCGCAGcg -5'
16433 3' -58.8 NC_004084.1 + 42060 0.69 0.402111
Target:  5'- -aCCGAgcUCCACCacgcgaagcaacUCGUCGCgGUCGCg -3'
miRNA:   3'- gcGGCUgcAGGUGG------------AGCAGCG-CAGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.