Results 41 - 60 of 102 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
16433 | 3' | -58.8 | NC_004084.1 | + | 28091 | 0.69 | 0.405626 |
Target: 5'- uCGCCGACGgucaacgguucggggUgCGCCUCGacgagCGCGUCa- -3' miRNA: 3'- -GCGGCUGC---------------AgGUGGAGCa----GCGCAGcg -5' |
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16433 | 3' | -58.8 | NC_004084.1 | + | 5689 | 0.69 | 0.402111 |
Target: 5'- uCGUCGAgGUCCGCUggguugaguUCGagGaCGUCGCu -3' miRNA: 3'- -GCGGCUgCAGGUGG---------AGCagC-GCAGCG- -5' |
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16433 | 3' | -58.8 | NC_004084.1 | + | 29988 | 0.69 | 0.410936 |
Target: 5'- -aCCGGCGUCgACCUgGUCGCuggugacgacGUCaGCg -3' miRNA: 3'- gcGGCUGCAGgUGGAgCAGCG----------CAG-CG- -5' |
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16433 | 3' | -58.8 | NC_004084.1 | + | 17836 | 0.69 | 0.428031 |
Target: 5'- uCGCCGA-GUUCgauggugACCUCGUCGCc-CGCa -3' miRNA: 3'- -GCGGCUgCAGG-------UGGAGCAGCGcaGCG- -5' |
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16433 | 3' | -58.8 | NC_004084.1 | + | 4356 | 0.69 | 0.428942 |
Target: 5'- uCGCC--CGUCU-CCUCGUCGCG-CGUc -3' miRNA: 3'- -GCGGcuGCAGGuGGAGCAGCGCaGCG- -5' |
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16433 | 3' | -58.8 | NC_004084.1 | + | 12750 | 0.69 | 0.447406 |
Target: 5'- uCGUCGACGccgaCCGUCUCGUCGuUGUCGg -3' miRNA: 3'- -GCGGCUGCa---GGUGGAGCAGC-GCAGCg -5' |
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16433 | 3' | -58.8 | NC_004084.1 | + | 673 | 0.69 | 0.438118 |
Target: 5'- uGUgGAUGUCgGCUUCGUCGaCGUCc- -3' miRNA: 3'- gCGgCUGCAGgUGGAGCAGC-GCAGcg -5' |
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16433 | 3' | -58.8 | NC_004084.1 | + | 49406 | 0.69 | 0.434434 |
Target: 5'- uCGUCGugGUCCucgaaccaggaguCCUCGUCGaacUCGUa -3' miRNA: 3'- -GCGGCugCAGGu------------GGAGCAGCgc-AGCG- -5' |
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16433 | 3' | -58.8 | NC_004084.1 | + | 50765 | 0.69 | 0.428942 |
Target: 5'- uCGCCGuCGUCCGgcuCUUCGUCaGCGUUc- -3' miRNA: 3'- -GCGGCuGCAGGU---GGAGCAG-CGCAGcg -5' |
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16433 | 3' | -58.8 | NC_004084.1 | + | 39583 | 0.68 | 0.505276 |
Target: 5'- uCGUCGACGaggUCCcgggcGCgCUUGUCugGCGUCGCc -3' miRNA: 3'- -GCGGCUGC---AGG-----UG-GAGCAG--CGCAGCG- -5' |
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16433 | 3' | -58.8 | NC_004084.1 | + | 36414 | 0.68 | 0.495395 |
Target: 5'- uGUCGAuguuCGUCCGCgCgUCGUCGaCGUaCGCc -3' miRNA: 3'- gCGGCU----GCAGGUG-G-AGCAGC-GCA-GCG- -5' |
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16433 | 3' | -58.8 | NC_004084.1 | + | 50998 | 0.68 | 0.505276 |
Target: 5'- cCGUCGGCaUCgC-CCUCGUCGuCGaUCGCc -3' miRNA: 3'- -GCGGCUGcAG-GuGGAGCAGC-GC-AGCG- -5' |
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16433 | 3' | -58.8 | NC_004084.1 | + | 48392 | 0.68 | 0.484629 |
Target: 5'- cCGUCGACGcggcaucguggCCGCCaucucggagaucuUCGUCGaCGUCGUc -3' miRNA: 3'- -GCGGCUGCa----------GGUGG-------------AGCAGC-GCAGCG- -5' |
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16433 | 3' | -58.8 | NC_004084.1 | + | 20995 | 0.68 | 0.482683 |
Target: 5'- cCGCCGcuaucgagauccaaGCGUCCAUCaUCGgccaGCGUCuGCc -3' miRNA: 3'- -GCGGC--------------UGCAGGUGG-AGCag--CGCAG-CG- -5' |
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16433 | 3' | -58.8 | NC_004084.1 | + | 57857 | 0.68 | 0.475903 |
Target: 5'- gGCCGGgaaGauccCCGCCUUGUCGCaGUCGa -3' miRNA: 3'- gCGGCUg--Ca---GGUGGAGCAGCG-CAGCg -5' |
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16433 | 3' | -58.8 | NC_004084.1 | + | 54798 | 0.68 | 0.473975 |
Target: 5'- aGCCGAUcgccucguagucgGUCCagGCCgucuggaggacguUCGUCGCgGUCGCc -3' miRNA: 3'- gCGGCUG-------------CAGG--UGG-------------AGCAGCG-CAGCG- -5' |
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16433 | 3' | -58.8 | NC_004084.1 | + | 22331 | 0.68 | 0.466302 |
Target: 5'- uCGUaggaGACGgCgACCUCGUCGCGguccUCGUc -3' miRNA: 3'- -GCGg---CUGCaGgUGGAGCAGCGC----AGCG- -5' |
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16433 | 3' | -58.8 | NC_004084.1 | + | 38851 | 0.68 | 0.456801 |
Target: 5'- gGUCuggGACGUCguCCUCGUCGagccagaGUUGCg -3' miRNA: 3'- gCGG---CUGCAGguGGAGCAGCg------CAGCG- -5' |
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16433 | 3' | -58.8 | NC_004084.1 | + | 26222 | 0.68 | 0.475903 |
Target: 5'- aCGaCUGGC-UCCACCaaccgcuguUCGUCGgGUCGUu -3' miRNA: 3'- -GC-GGCUGcAGGUGG---------AGCAGCgCAGCG- -5' |
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16433 | 3' | -58.8 | NC_004084.1 | + | 9383 | 0.68 | 0.475903 |
Target: 5'- uGCCGuccCGUCCcguCCaggaCGUCGUGUCGg -3' miRNA: 3'- gCGGCu--GCAGGu--GGa---GCAGCGCAGCg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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