miRNA display CGI


Results 1 - 20 of 102 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16433 3' -58.8 NC_004084.1 + 35338 1.1 0.000566
Target:  5'- uCGCCGACGUCCACCUCGUCGCGUCGCc -3'
miRNA:   3'- -GCGGCUGCAGGUGGAGCAGCGCAGCG- -5'
16433 3' -58.8 NC_004084.1 + 11003 0.81 0.067556
Target:  5'- uCGCCGACGUCCuucgGCUUCGUCGuCG-CGCc -3'
miRNA:   3'- -GCGGCUGCAGG----UGGAGCAGC-GCaGCG- -5'
16433 3' -58.8 NC_004084.1 + 19968 0.78 0.1195
Target:  5'- gGCCGugGUUgACgaCGUCGaCGUCGCg -3'
miRNA:   3'- gCGGCugCAGgUGgaGCAGC-GCAGCG- -5'
16433 3' -58.8 NC_004084.1 + 47360 0.77 0.132929
Target:  5'- uCGUCGGCGgCCGCCccuUCGUcCGCGUCGUc -3'
miRNA:   3'- -GCGGCUGCaGGUGG---AGCA-GCGCAGCG- -5'
16433 3' -58.8 NC_004084.1 + 28927 0.76 0.147737
Target:  5'- aG-CGACGUCgGCCUCGggagCGCGUCGa -3'
miRNA:   3'- gCgGCUGCAGgUGGAGCa---GCGCAGCg -5'
16433 3' -58.8 NC_004084.1 + 5482 0.76 0.151667
Target:  5'- aCGCCGACGgCCAgaUCGUCGCaGUCGa -3'
miRNA:   3'- -GCGGCUGCaGGUggAGCAGCG-CAGCg -5'
16433 3' -58.8 NC_004084.1 + 52091 0.76 0.151667
Target:  5'- uCGCCGACGUuaCCGCCgggaUGUCGaCGUCGg -3'
miRNA:   3'- -GCGGCUGCA--GGUGGa---GCAGC-GCAGCg -5'
16433 3' -58.8 NC_004084.1 + 35674 0.75 0.186661
Target:  5'- uCGUCGAUGUCCucguACCgcugggcggacuUCGUCGgGUCGCu -3'
miRNA:   3'- -GCGGCUGCAGG----UGG------------AGCAGCgCAGCG- -5'
16433 3' -58.8 NC_004084.1 + 21484 0.74 0.211997
Target:  5'- gGgCGGCGaUCGCCUCgGUUGCGUCGUa -3'
miRNA:   3'- gCgGCUGCaGGUGGAG-CAGCGCAGCG- -5'
16433 3' -58.8 NC_004084.1 + 51720 0.74 0.217406
Target:  5'- uCGCCGGCGUUgACCUCGagaUgGaCGUCGUc -3'
miRNA:   3'- -GCGGCUGCAGgUGGAGC---AgC-GCAGCG- -5'
16433 3' -58.8 NC_004084.1 + 49991 0.74 0.222934
Target:  5'- gGuuGACGUCCGCCUCGcccaugaucaCGuUGUCGCc -3'
miRNA:   3'- gCggCUGCAGGUGGAGCa---------GC-GCAGCG- -5'
16433 3' -58.8 NC_004084.1 + 35444 0.73 0.234346
Target:  5'- gGUCGACcaggacucgGUCgGCCUCGUCGCGagugUCGUg -3'
miRNA:   3'- gCGGCUG---------CAGgUGGAGCAGCGC----AGCG- -5'
16433 3' -58.8 NC_004084.1 + 31203 0.73 0.240235
Target:  5'- gCGUCGACGUCgucgcgaACCUCGagguacgcauUCaGCGUCGCg -3'
miRNA:   3'- -GCGGCUGCAGg------UGGAGC----------AG-CGCAGCG- -5'
16433 3' -58.8 NC_004084.1 + 397 0.73 0.24564
Target:  5'- cCGCCGAUGUCgCagACgUCGUCGaucuggaCGUCGCa -3'
miRNA:   3'- -GCGGCUGCAG-G--UGgAGCAGC-------GCAGCG- -5'
16433 3' -58.8 NC_004084.1 + 4244 0.72 0.278186
Target:  5'- -cCCGACGUggUCGCCUCGUUGCuucUCGCc -3'
miRNA:   3'- gcGGCUGCA--GGUGGAGCAGCGc--AGCG- -5'
16433 3' -58.8 NC_004084.1 + 16085 0.72 0.284958
Target:  5'- cCGCCGccuCGUCgAUCUCGUCccgacgguCGUCGCg -3'
miRNA:   3'- -GCGGCu--GCAGgUGGAGCAGc-------GCAGCG- -5'
16433 3' -58.8 NC_004084.1 + 16962 0.72 0.291858
Target:  5'- uCGCCGGCcaCUgcaagACCUCGaUCGCGUCGg -3'
miRNA:   3'- -GCGGCUGcaGG-----UGGAGC-AGCGCAGCg -5'
16433 3' -58.8 NC_004084.1 + 14718 0.72 0.298889
Target:  5'- aGCUGA--UCCACUUCGUCGacgcgcccgucCGUCGCa -3'
miRNA:   3'- gCGGCUgcAGGUGGAGCAGC-----------GCAGCG- -5'
16433 3' -58.8 NC_004084.1 + 16649 0.71 0.304608
Target:  5'- uCGUCGACGUCguccgggagguCCUCGUCgccgGCGUCGUc -3'
miRNA:   3'- -GCGGCUGCAGgu---------GGAGCAG----CGCAGCG- -5'
16433 3' -58.8 NC_004084.1 + 50518 0.71 0.30605
Target:  5'- gCGCCGACuGUCuCGgUUCGgaUCGCGUCGa -3'
miRNA:   3'- -GCGGCUG-CAG-GUgGAGC--AGCGCAGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.