miRNA display CGI


Results 21 - 40 of 102 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16433 3' -58.8 NC_004084.1 + 50518 0.71 0.30605
Target:  5'- gCGCCGACuGUCuCGgUUCGgaUCGCGUCGa -3'
miRNA:   3'- -GCGGCUG-CAG-GUgGAGC--AGCGCAGCg -5'
16433 3' -58.8 NC_004084.1 + 56115 0.71 0.313342
Target:  5'- uCGUCGACGUCgugCGCCgcagugUCGUCGgCGUCGa -3'
miRNA:   3'- -GCGGCUGCAG---GUGG------AGCAGC-GCAGCg -5'
16433 3' -58.8 NC_004084.1 + 55818 0.71 0.320765
Target:  5'- aCGUCGAC-UUCACCUCG--GCGUCGUc -3'
miRNA:   3'- -GCGGCUGcAGGUGGAGCagCGCAGCG- -5'
16433 3' -58.8 NC_004084.1 + 16790 0.71 0.328319
Target:  5'- aCGUCGAUGUCCcggaC-CGUCGCcUCGCg -3'
miRNA:   3'- -GCGGCUGCAGGug--GaGCAGCGcAGCG- -5'
16433 3' -58.8 NC_004084.1 + 52950 0.71 0.336003
Target:  5'- cCGUCGGCGUCguCgugaUCGUCGCGagugCGCu -3'
miRNA:   3'- -GCGGCUGCAGguGg---AGCAGCGCa---GCG- -5'
16433 3' -58.8 NC_004084.1 + 15682 0.71 0.336003
Target:  5'- gGCCGAUGUCCuucGCCUgcUCGCGaUCGg -3'
miRNA:   3'- gCGGCUGCAGG---UGGAgcAGCGC-AGCg -5'
16433 3' -58.8 NC_004084.1 + 51520 0.71 0.336003
Target:  5'- aCGuCCGACucgagcgCCAUUUCGaUCGCGUCGUg -3'
miRNA:   3'- -GC-GGCUGca-----GGUGGAGC-AGCGCAGCG- -5'
16433 3' -58.8 NC_004084.1 + 30909 0.71 0.343818
Target:  5'- aGCCGugGUCCuCCUggaagaCGUCGa-UCGCu -3'
miRNA:   3'- gCGGCugCAGGuGGA------GCAGCgcAGCG- -5'
16433 3' -58.8 NC_004084.1 + 40648 0.7 0.359836
Target:  5'- aCGUCGACGUCCAguacaugcUCUCGcCGCGgauccagaGCa -3'
miRNA:   3'- -GCGGCUGCAGGU--------GGAGCaGCGCag------CG- -5'
16433 3' -58.8 NC_004084.1 + 46549 0.7 0.359836
Target:  5'- -uUCGACGUCCGgaUCGUCGUcgGUCGUg -3'
miRNA:   3'- gcGGCUGCAGGUggAGCAGCG--CAGCG- -5'
16433 3' -58.8 NC_004084.1 + 1054 0.7 0.373857
Target:  5'- uCGCCGAgGUCgAacagccaCUCGUCGCGcaucuucacgaccuUCGCc -3'
miRNA:   3'- -GCGGCUgCAGgUg------GAGCAGCGC--------------AGCG- -5'
16433 3' -58.8 NC_004084.1 + 36881 0.7 0.381427
Target:  5'- aGCCGACGgaagaugcgaucgCCAuCCUCGagGCGUucUGCg -3'
miRNA:   3'- gCGGCUGCa------------GGU-GGAGCagCGCA--GCG- -5'
16433 3' -58.8 NC_004084.1 + 27573 0.7 0.384825
Target:  5'- aGCgGGcCGcCCACCUCuuUCGaCGUCGCg -3'
miRNA:   3'- gCGgCU-GCaGGUGGAGc-AGC-GCAGCG- -5'
16433 3' -58.8 NC_004084.1 + 18631 0.7 0.384825
Target:  5'- uCGCCGAguUGgCCgACCUCGUCGcCGUCu- -3'
miRNA:   3'- -GCGGCU--GCaGG-UGGAGCAGC-GCAGcg -5'
16433 3' -58.8 NC_004084.1 + 5689 0.69 0.402111
Target:  5'- uCGUCGAgGUCCGCUggguugaguUCGagGaCGUCGCu -3'
miRNA:   3'- -GCGGCUgCAGGUGG---------AGCagC-GCAGCG- -5'
16433 3' -58.8 NC_004084.1 + 36303 0.69 0.402111
Target:  5'- aGCCGgggauGCGaUUCGCCaauUCGUCuGCGUCGUa -3'
miRNA:   3'- gCGGC-----UGC-AGGUGG---AGCAG-CGCAGCG- -5'
16433 3' -58.8 NC_004084.1 + 42060 0.69 0.402111
Target:  5'- -aCCGAgcUCCACCacgcgaagcaacUCGUCGCgGUCGCg -3'
miRNA:   3'- gcGGCUgcAGGUGG------------AGCAGCG-CAGCG- -5'
16433 3' -58.8 NC_004084.1 + 28091 0.69 0.405626
Target:  5'- uCGCCGACGgucaacgguucggggUgCGCCUCGacgagCGCGUCa- -3'
miRNA:   3'- -GCGGCUGC---------------AgGUGGAGCa----GCGCAGcg -5'
16433 3' -58.8 NC_004084.1 + 29988 0.69 0.410936
Target:  5'- -aCCGGCGUCgACCUgGUCGCuggugacgacGUCaGCg -3'
miRNA:   3'- gcGGCUGCAGgUGGAgCAGCG----------CAG-CG- -5'
16433 3' -58.8 NC_004084.1 + 28381 0.69 0.410936
Target:  5'- gCGUuuCGACGUgCACCaUCuUCGCGUCGa -3'
miRNA:   3'- -GCG--GCUGCAgGUGG-AGcAGCGCAGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.