miRNA display CGI


Results 41 - 60 of 102 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16433 3' -58.8 NC_004084.1 + 29988 0.69 0.410936
Target:  5'- -aCCGGCGUCgACCUgGUCGCuggugacgacGUCaGCg -3'
miRNA:   3'- gcGGCUGCAGgUGGAgCAGCG----------CAG-CG- -5'
16433 3' -58.8 NC_004084.1 + 17836 0.69 0.428031
Target:  5'- uCGCCGA-GUUCgauggugACCUCGUCGCc-CGCa -3'
miRNA:   3'- -GCGGCUgCAGG-------UGGAGCAGCGcaGCG- -5'
16433 3' -58.8 NC_004084.1 + 4356 0.69 0.428942
Target:  5'- uCGCC--CGUCU-CCUCGUCGCG-CGUc -3'
miRNA:   3'- -GCGGcuGCAGGuGGAGCAGCGCaGCG- -5'
16433 3' -58.8 NC_004084.1 + 50765 0.69 0.428942
Target:  5'- uCGCCGuCGUCCGgcuCUUCGUCaGCGUUc- -3'
miRNA:   3'- -GCGGCuGCAGGU---GGAGCAG-CGCAGcg -5'
16433 3' -58.8 NC_004084.1 + 49406 0.69 0.434434
Target:  5'- uCGUCGugGUCCucgaaccaggaguCCUCGUCGaacUCGUa -3'
miRNA:   3'- -GCGGCugCAGGu------------GGAGCAGCgc-AGCG- -5'
16433 3' -58.8 NC_004084.1 + 673 0.69 0.438118
Target:  5'- uGUgGAUGUCgGCUUCGUCGaCGUCc- -3'
miRNA:   3'- gCGgCUGCAGgUGGAGCAGC-GCAGcg -5'
16433 3' -58.8 NC_004084.1 + 28160 0.69 0.438118
Target:  5'- gGCUGGaauaGUCCGuCCUCGgccuguUCGaCGUCGCc -3'
miRNA:   3'- gCGGCUg---CAGGU-GGAGC------AGC-GCAGCG- -5'
16433 3' -58.8 NC_004084.1 + 12750 0.69 0.447406
Target:  5'- uCGUCGACGccgaCCGUCUCGUCGuUGUCGg -3'
miRNA:   3'- -GCGGCUGCa---GGUGGAGCAGC-GCAGCg -5'
16433 3' -58.8 NC_004084.1 + 3071 0.69 0.447406
Target:  5'- uCGUCGACGggCCG-CUCGUCGaCGUgCGUu -3'
miRNA:   3'- -GCGGCUGCa-GGUgGAGCAGC-GCA-GCG- -5'
16433 3' -58.8 NC_004084.1 + 38851 0.68 0.456801
Target:  5'- gGUCuggGACGUCguCCUCGUCGagccagaGUUGCg -3'
miRNA:   3'- gCGG---CUGCAGguGGAGCAGCg------CAGCG- -5'
16433 3' -58.8 NC_004084.1 + 50931 0.68 0.465347
Target:  5'- gGCCGAcuugcuCGUCuCGCCUucgcCGUCGCcgcucgaGUCGCc -3'
miRNA:   3'- gCGGCU------GCAG-GUGGA----GCAGCG-------CAGCG- -5'
16433 3' -58.8 NC_004084.1 + 22331 0.68 0.466302
Target:  5'- uCGUaggaGACGgCgACCUCGUCGCGguccUCGUc -3'
miRNA:   3'- -GCGg---CUGCaGgUGGAGCAGCGC----AGCG- -5'
16433 3' -58.8 NC_004084.1 + 54798 0.68 0.473975
Target:  5'- aGCCGAUcgccucguagucgGUCCagGCCgucuggaggacguUCGUCGCgGUCGCc -3'
miRNA:   3'- gCGGCUG-------------CAGG--UGG-------------AGCAGCG-CAGCG- -5'
16433 3' -58.8 NC_004084.1 + 26222 0.68 0.475903
Target:  5'- aCGaCUGGC-UCCACCaaccgcuguUCGUCGgGUCGUu -3'
miRNA:   3'- -GC-GGCUGcAGGUGG---------AGCAGCgCAGCG- -5'
16433 3' -58.8 NC_004084.1 + 9383 0.68 0.475903
Target:  5'- uGCCGuccCGUCCcguCCaggaCGUCGUGUCGg -3'
miRNA:   3'- gCGGCu--GCAGGu--GGa---GCAGCGCAGCg -5'
16433 3' -58.8 NC_004084.1 + 57857 0.68 0.475903
Target:  5'- gGCCGGgaaGauccCCGCCUUGUCGCaGUCGa -3'
miRNA:   3'- gCGGCUg--Ca---GGUGGAGCAGCG-CAGCg -5'
16433 3' -58.8 NC_004084.1 + 20995 0.68 0.482683
Target:  5'- cCGCCGcuaucgagauccaaGCGUCCAUCaUCGgccaGCGUCuGCc -3'
miRNA:   3'- -GCGGC--------------UGCAGGUGG-AGCag--CGCAG-CG- -5'
16433 3' -58.8 NC_004084.1 + 48392 0.68 0.484629
Target:  5'- cCGUCGACGcggcaucguggCCGCCaucucggagaucuUCGUCGaCGUCGUc -3'
miRNA:   3'- -GCGGCUGCa----------GGUGG-------------AGCAGC-GCAGCG- -5'
16433 3' -58.8 NC_004084.1 + 9071 0.68 0.485603
Target:  5'- aCGUCGACGaUCACCUCGaCaCGaUCGCc -3'
miRNA:   3'- -GCGGCUGCaGGUGGAGCaGcGC-AGCG- -5'
16433 3' -58.8 NC_004084.1 + 23362 0.68 0.485603
Target:  5'- gGUCGACGUCgACgUUCGgaUC-CGUCGCg -3'
miRNA:   3'- gCGGCUGCAGgUG-GAGC--AGcGCAGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.