Results 41 - 60 of 102 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
16433 | 3' | -58.8 | NC_004084.1 | + | 36414 | 0.68 | 0.495395 |
Target: 5'- uGUCGAuguuCGUCCGCgCgUCGUCGaCGUaCGCc -3' miRNA: 3'- gCGGCU----GCAGGUG-G-AGCAGC-GCA-GCG- -5' |
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16433 | 3' | -58.8 | NC_004084.1 | + | 23362 | 0.68 | 0.485603 |
Target: 5'- gGUCGACGUCgACgUUCGgaUC-CGUCGCg -3' miRNA: 3'- gCGGCUGCAGgUG-GAGC--AGcGCAGCG- -5' |
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16433 | 3' | -58.8 | NC_004084.1 | + | 40450 | 0.68 | 0.485603 |
Target: 5'- gCGCCGACGauUCCGCCgUCaUCG-GUUGUu -3' miRNA: 3'- -GCGGCUGC--AGGUGG-AGcAGCgCAGCG- -5' |
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16433 | 3' | -58.8 | NC_004084.1 | + | 9071 | 0.68 | 0.485603 |
Target: 5'- aCGUCGACGaUCACCUCGaCaCGaUCGCc -3' miRNA: 3'- -GCGGCUGCaGGUGGAGCaGcGC-AGCG- -5' |
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16433 | 3' | -58.8 | NC_004084.1 | + | 48392 | 0.68 | 0.484629 |
Target: 5'- cCGUCGACGcggcaucguggCCGCCaucucggagaucuUCGUCGaCGUCGUc -3' miRNA: 3'- -GCGGCUGCa----------GGUGG-------------AGCAGC-GCAGCG- -5' |
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16433 | 3' | -58.8 | NC_004084.1 | + | 20995 | 0.68 | 0.482683 |
Target: 5'- cCGCCGcuaucgagauccaaGCGUCCAUCaUCGgccaGCGUCuGCc -3' miRNA: 3'- -GCGGC--------------UGCAGGUGG-AGCag--CGCAG-CG- -5' |
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16433 | 3' | -58.8 | NC_004084.1 | + | 26222 | 0.68 | 0.475903 |
Target: 5'- aCGaCUGGC-UCCACCaaccgcuguUCGUCGgGUCGUu -3' miRNA: 3'- -GC-GGCUGcAGGUGG---------AGCAGCgCAGCG- -5' |
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16433 | 3' | -58.8 | NC_004084.1 | + | 9383 | 0.68 | 0.475903 |
Target: 5'- uGCCGuccCGUCCcguCCaggaCGUCGUGUCGg -3' miRNA: 3'- gCGGCu--GCAGGu--GGa---GCAGCGCAGCg -5' |
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16433 | 3' | -58.8 | NC_004084.1 | + | 57857 | 0.68 | 0.475903 |
Target: 5'- gGCCGGgaaGauccCCGCCUUGUCGCaGUCGa -3' miRNA: 3'- gCGGCUg--Ca---GGUGGAGCAGCG-CAGCg -5' |
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16433 | 3' | -58.8 | NC_004084.1 | + | 54798 | 0.68 | 0.473975 |
Target: 5'- aGCCGAUcgccucguagucgGUCCagGCCgucuggaggacguUCGUCGCgGUCGCc -3' miRNA: 3'- gCGGCUG-------------CAGG--UGG-------------AGCAGCG-CAGCG- -5' |
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16433 | 3' | -58.8 | NC_004084.1 | + | 22331 | 0.68 | 0.466302 |
Target: 5'- uCGUaggaGACGgCgACCUCGUCGCGguccUCGUc -3' miRNA: 3'- -GCGg---CUGCaGgUGGAGCAGCGC----AGCG- -5' |
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16433 | 3' | -58.8 | NC_004084.1 | + | 50931 | 0.68 | 0.465347 |
Target: 5'- gGCCGAcuugcuCGUCuCGCCUucgcCGUCGCcgcucgaGUCGCc -3' miRNA: 3'- gCGGCU------GCAG-GUGGA----GCAGCG-------CAGCG- -5' |
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16433 | 3' | -58.8 | NC_004084.1 | + | 38851 | 0.68 | 0.456801 |
Target: 5'- gGUCuggGACGUCguCCUCGUCGagccagaGUUGCg -3' miRNA: 3'- gCGG---CUGCAGguGGAGCAGCg------CAGCG- -5' |
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16433 | 3' | -58.8 | NC_004084.1 | + | 12750 | 0.69 | 0.447406 |
Target: 5'- uCGUCGACGccgaCCGUCUCGUCGuUGUCGg -3' miRNA: 3'- -GCGGCUGCa---GGUGGAGCAGC-GCAGCg -5' |
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16433 | 3' | -58.8 | NC_004084.1 | + | 3071 | 0.69 | 0.447406 |
Target: 5'- uCGUCGACGggCCG-CUCGUCGaCGUgCGUu -3' miRNA: 3'- -GCGGCUGCa-GGUgGAGCAGC-GCA-GCG- -5' |
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16433 | 3' | -58.8 | NC_004084.1 | + | 673 | 0.69 | 0.438118 |
Target: 5'- uGUgGAUGUCgGCUUCGUCGaCGUCc- -3' miRNA: 3'- gCGgCUGCAGgUGGAGCAGC-GCAGcg -5' |
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16433 | 3' | -58.8 | NC_004084.1 | + | 28160 | 0.69 | 0.438118 |
Target: 5'- gGCUGGaauaGUCCGuCCUCGgccuguUCGaCGUCGCc -3' miRNA: 3'- gCGGCUg---CAGGU-GGAGC------AGC-GCAGCG- -5' |
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16433 | 3' | -58.8 | NC_004084.1 | + | 49406 | 0.69 | 0.434434 |
Target: 5'- uCGUCGugGUCCucgaaccaggaguCCUCGUCGaacUCGUa -3' miRNA: 3'- -GCGGCugCAGGu------------GGAGCAGCgc-AGCG- -5' |
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16433 | 3' | -58.8 | NC_004084.1 | + | 50765 | 0.69 | 0.428942 |
Target: 5'- uCGCCGuCGUCCGgcuCUUCGUCaGCGUUc- -3' miRNA: 3'- -GCGGCuGCAGGU---GGAGCAG-CGCAGcg -5' |
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16433 | 3' | -58.8 | NC_004084.1 | + | 4356 | 0.69 | 0.428942 |
Target: 5'- uCGCC--CGUCU-CCUCGUCGCG-CGUc -3' miRNA: 3'- -GCGGcuGCAGGuGGAGCAGCGCaGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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