Results 81 - 100 of 102 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16433 | 3' | -58.8 | NC_004084.1 | + | 56115 | 0.71 | 0.313342 |
Target: 5'- uCGUCGACGUCgugCGCCgcagugUCGUCGgCGUCGa -3' miRNA: 3'- -GCGGCUGCAG---GUGG------AGCAGC-GCAGCg -5' |
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16433 | 3' | -58.8 | NC_004084.1 | + | 50518 | 0.71 | 0.30605 |
Target: 5'- gCGCCGACuGUCuCGgUUCGgaUCGCGUCGa -3' miRNA: 3'- -GCGGCUG-CAG-GUgGAGC--AGCGCAGCg -5' |
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16433 | 3' | -58.8 | NC_004084.1 | + | 51829 | 0.71 | 0.30605 |
Target: 5'- cCGCCGACugucgCCACuCUCGaagagCGCGUgGCu -3' miRNA: 3'- -GCGGCUGca---GGUG-GAGCa----GCGCAgCG- -5' |
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16433 | 3' | -58.8 | NC_004084.1 | + | 16649 | 0.71 | 0.304608 |
Target: 5'- uCGUCGACGUCguccgggagguCCUCGUCgccgGCGUCGUc -3' miRNA: 3'- -GCGGCUGCAGgu---------GGAGCAG----CGCAGCG- -5' |
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16433 | 3' | -58.8 | NC_004084.1 | + | 14718 | 0.72 | 0.298889 |
Target: 5'- aGCUGA--UCCACUUCGUCGacgcgcccgucCGUCGCa -3' miRNA: 3'- gCGGCUgcAGGUGGAGCAGC-----------GCAGCG- -5' |
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16433 | 3' | -58.8 | NC_004084.1 | + | 16962 | 0.72 | 0.291858 |
Target: 5'- uCGCCGGCcaCUgcaagACCUCGaUCGCGUCGg -3' miRNA: 3'- -GCGGCUGcaGG-----UGGAGC-AGCGCAGCg -5' |
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16433 | 3' | -58.8 | NC_004084.1 | + | 16085 | 0.72 | 0.284958 |
Target: 5'- cCGCCGccuCGUCgAUCUCGUCccgacgguCGUCGCg -3' miRNA: 3'- -GCGGCu--GCAGgUGGAGCAGc-------GCAGCG- -5' |
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16433 | 3' | -58.8 | NC_004084.1 | + | 4244 | 0.72 | 0.278186 |
Target: 5'- -cCCGACGUggUCGCCUCGUUGCuucUCGCc -3' miRNA: 3'- gcGGCUGCA--GGUGGAGCAGCGc--AGCG- -5' |
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16433 | 3' | -58.8 | NC_004084.1 | + | 397 | 0.73 | 0.24564 |
Target: 5'- cCGCCGAUGUCgCagACgUCGUCGaucuggaCGUCGCa -3' miRNA: 3'- -GCGGCUGCAG-G--UGgAGCAGC-------GCAGCG- -5' |
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16433 | 3' | -58.8 | NC_004084.1 | + | 31203 | 0.73 | 0.240235 |
Target: 5'- gCGUCGACGUCgucgcgaACCUCGagguacgcauUCaGCGUCGCg -3' miRNA: 3'- -GCGGCUGCAGg------UGGAGC----------AG-CGCAGCG- -5' |
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16433 | 3' | -58.8 | NC_004084.1 | + | 35444 | 0.73 | 0.234346 |
Target: 5'- gGUCGACcaggacucgGUCgGCCUCGUCGCGagugUCGUg -3' miRNA: 3'- gCGGCUG---------CAGgUGGAGCAGCGC----AGCG- -5' |
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16433 | 3' | -58.8 | NC_004084.1 | + | 49991 | 0.74 | 0.222934 |
Target: 5'- gGuuGACGUCCGCCUCGcccaugaucaCGuUGUCGCc -3' miRNA: 3'- gCggCUGCAGGUGGAGCa---------GC-GCAGCG- -5' |
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16433 | 3' | -58.8 | NC_004084.1 | + | 51720 | 0.74 | 0.217406 |
Target: 5'- uCGCCGGCGUUgACCUCGagaUgGaCGUCGUc -3' miRNA: 3'- -GCGGCUGCAGgUGGAGC---AgC-GCAGCG- -5' |
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16433 | 3' | -58.8 | NC_004084.1 | + | 21484 | 0.74 | 0.211997 |
Target: 5'- gGgCGGCGaUCGCCUCgGUUGCGUCGUa -3' miRNA: 3'- gCgGCUGCaGGUGGAG-CAGCGCAGCG- -5' |
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16433 | 3' | -58.8 | NC_004084.1 | + | 35674 | 0.75 | 0.186661 |
Target: 5'- uCGUCGAUGUCCucguACCgcugggcggacuUCGUCGgGUCGCu -3' miRNA: 3'- -GCGGCUGCAGG----UGG------------AGCAGCgCAGCG- -5' |
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16433 | 3' | -58.8 | NC_004084.1 | + | 52091 | 0.76 | 0.151667 |
Target: 5'- uCGCCGACGUuaCCGCCgggaUGUCGaCGUCGg -3' miRNA: 3'- -GCGGCUGCA--GGUGGa---GCAGC-GCAGCg -5' |
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16433 | 3' | -58.8 | NC_004084.1 | + | 5482 | 0.76 | 0.151667 |
Target: 5'- aCGCCGACGgCCAgaUCGUCGCaGUCGa -3' miRNA: 3'- -GCGGCUGCaGGUggAGCAGCG-CAGCg -5' |
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16433 | 3' | -58.8 | NC_004084.1 | + | 28927 | 0.76 | 0.147737 |
Target: 5'- aG-CGACGUCgGCCUCGggagCGCGUCGa -3' miRNA: 3'- gCgGCUGCAGgUGGAGCa---GCGCAGCg -5' |
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16433 | 3' | -58.8 | NC_004084.1 | + | 47360 | 0.77 | 0.132929 |
Target: 5'- uCGUCGGCGgCCGCCccuUCGUcCGCGUCGUc -3' miRNA: 3'- -GCGGCUGCaGGUGG---AGCA-GCGCAGCG- -5' |
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16433 | 3' | -58.8 | NC_004084.1 | + | 19968 | 0.78 | 0.1195 |
Target: 5'- gGCCGugGUUgACgaCGUCGaCGUCGCg -3' miRNA: 3'- gCGGCugCAGgUGgaGCAGC-GCAGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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