miRNA display CGI


Results 1 - 20 of 102 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16433 3' -58.8 NC_004084.1 + 397 0.73 0.24564
Target:  5'- cCGCCGAUGUCgCagACgUCGUCGaucuggaCGUCGCa -3'
miRNA:   3'- -GCGGCUGCAG-G--UGgAGCAGC-------GCAGCG- -5'
16433 3' -58.8 NC_004084.1 + 673 0.69 0.438118
Target:  5'- uGUgGAUGUCgGCUUCGUCGaCGUCc- -3'
miRNA:   3'- gCGgCUGCAGgUGGAGCAGC-GCAGcg -5'
16433 3' -58.8 NC_004084.1 + 983 0.67 0.5354
Target:  5'- uCGCUGAguucgagguguUGUCCACCUCGa-GC-UCGCc -3'
miRNA:   3'- -GCGGCU-----------GCAGGUGGAGCagCGcAGCG- -5'
16433 3' -58.8 NC_004084.1 + 1054 0.7 0.373857
Target:  5'- uCGCCGAgGUCgAacagccaCUCGUCGCGcaucuucacgaccuUCGCc -3'
miRNA:   3'- -GCGGCUgCAGgUg------GAGCAGCGC--------------AGCG- -5'
16433 3' -58.8 NC_004084.1 + 1100 0.66 0.618219
Target:  5'- cCGCUuuguaGGCGUCCcCCUCGUCGaggagGUCc- -3'
miRNA:   3'- -GCGG-----CUGCAGGuGGAGCAGCg----CAGcg -5'
16433 3' -58.8 NC_004084.1 + 3071 0.69 0.447406
Target:  5'- uCGUCGACGggCCG-CUCGUCGaCGUgCGUu -3'
miRNA:   3'- -GCGGCUGCa-GGUgGAGCAGC-GCA-GCG- -5'
16433 3' -58.8 NC_004084.1 + 4244 0.72 0.278186
Target:  5'- -cCCGACGUggUCGCCUCGUUGCuucUCGCc -3'
miRNA:   3'- gcGGCUGCA--GGUGGAGCAGCGc--AGCG- -5'
16433 3' -58.8 NC_004084.1 + 4356 0.69 0.428942
Target:  5'- uCGCC--CGUCU-CCUCGUCGCG-CGUc -3'
miRNA:   3'- -GCGGcuGCAGGuGGAGCAGCGCaGCG- -5'
16433 3' -58.8 NC_004084.1 + 5120 0.66 0.607748
Target:  5'- gGCCGAcCGUCgauacaACCUCG--GCGUgGCg -3'
miRNA:   3'- gCGGCU-GCAGg-----UGGAGCagCGCAgCG- -5'
16433 3' -58.8 NC_004084.1 + 5145 0.67 0.515241
Target:  5'- uCGCCagGACGUCgCccggcccgAUCUCGUCGcCGUCGa -3'
miRNA:   3'- -GCGG--CUGCAG-G--------UGGAGCAGC-GCAGCg -5'
16433 3' -58.8 NC_004084.1 + 5252 0.66 0.597296
Target:  5'- aCGCUGGgGUCagucaucgGCCUCGUCGaCGaCGUc -3'
miRNA:   3'- -GCGGCUgCAGg-------UGGAGCAGC-GCaGCG- -5'
16433 3' -58.8 NC_004084.1 + 5482 0.76 0.151667
Target:  5'- aCGCCGACGgCCAgaUCGUCGCaGUCGa -3'
miRNA:   3'- -GCGGCUGCaGGUggAGCAGCG-CAGCg -5'
16433 3' -58.8 NC_004084.1 + 5689 0.69 0.402111
Target:  5'- uCGUCGAgGUCCGCUggguugaguUCGagGaCGUCGCu -3'
miRNA:   3'- -GCGGCUgCAGGUGG---------AGCagC-GCAGCG- -5'
16433 3' -58.8 NC_004084.1 + 6689 0.67 0.56613
Target:  5'- uCGaCGACGUCCAUCUCGagGUcaaCGCc -3'
miRNA:   3'- -GCgGCUGCAGGUGGAGCagCGca-GCG- -5'
16433 3' -58.8 NC_004084.1 + 8727 0.66 0.58687
Target:  5'- -cUCGGCGUCaC-CCUCGUgGaUGUCGCc -3'
miRNA:   3'- gcGGCUGCAG-GuGGAGCAgC-GCAGCG- -5'
16433 3' -58.8 NC_004084.1 + 9071 0.68 0.485603
Target:  5'- aCGUCGACGaUCACCUCGaCaCGaUCGCc -3'
miRNA:   3'- -GCGGCUGCaGGUGGAGCaGcGC-AGCG- -5'
16433 3' -58.8 NC_004084.1 + 9383 0.68 0.475903
Target:  5'- uGCCGuccCGUCCcguCCaggaCGUCGUGUCGg -3'
miRNA:   3'- gCGGCu--GCAGGu--GGa---GCAGCGCAGCg -5'
16433 3' -58.8 NC_004084.1 + 10386 0.67 0.515241
Target:  5'- -uUCGACGUCgAgCUCGUCGuCGUC-Ca -3'
miRNA:   3'- gcGGCUGCAGgUgGAGCAGC-GCAGcG- -5'
16433 3' -58.8 NC_004084.1 + 11003 0.81 0.067556
Target:  5'- uCGCCGACGUCCuucgGCUUCGUCGuCG-CGCc -3'
miRNA:   3'- -GCGGCUGCAGG----UGGAGCAGC-GCaGCG- -5'
16433 3' -58.8 NC_004084.1 + 12750 0.69 0.447406
Target:  5'- uCGUCGACGccgaCCGUCUCGUCGuUGUCGg -3'
miRNA:   3'- -GCGGCUGCa---GGUGGAGCAGC-GCAGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.