miRNA display CGI


Results 41 - 60 of 102 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16433 3' -58.8 NC_004084.1 + 23362 0.68 0.485603
Target:  5'- gGUCGACGUCgACgUUCGgaUC-CGUCGCg -3'
miRNA:   3'- gCGGCUGCAGgUG-GAGC--AGcGCAGCG- -5'
16433 3' -58.8 NC_004084.1 + 26222 0.68 0.475903
Target:  5'- aCGaCUGGC-UCCACCaaccgcuguUCGUCGgGUCGUu -3'
miRNA:   3'- -GC-GGCUGcAGGUGG---------AGCAGCgCAGCG- -5'
16433 3' -58.8 NC_004084.1 + 26878 0.67 0.565098
Target:  5'- aGCgCGAUGUCCuCCgaggCGaUCGCGgcauccaUCGCg -3'
miRNA:   3'- gCG-GCUGCAGGuGGa---GC-AGCGC-------AGCG- -5'
16433 3' -58.8 NC_004084.1 + 27024 0.66 0.597296
Target:  5'- uCGCCGAUaucggcguaGUCCGCCcCGUCGaguUCGa -3'
miRNA:   3'- -GCGGCUG---------CAGGUGGaGCAGCgc-AGCg -5'
16433 3' -58.8 NC_004084.1 + 27573 0.7 0.384825
Target:  5'- aGCgGGcCGcCCACCUCuuUCGaCGUCGCg -3'
miRNA:   3'- gCGgCU-GCaGGUGGAGc-AGC-GCAGCG- -5'
16433 3' -58.8 NC_004084.1 + 28091 0.69 0.405626
Target:  5'- uCGCCGACGgucaacgguucggggUgCGCCUCGacgagCGCGUCa- -3'
miRNA:   3'- -GCGGCUGC---------------AgGUGGAGCa----GCGCAGcg -5'
16433 3' -58.8 NC_004084.1 + 28160 0.69 0.438118
Target:  5'- gGCUGGaauaGUCCGuCCUCGgccuguUCGaCGUCGCc -3'
miRNA:   3'- gCGGCUg---CAGGU-GGAGC------AGC-GCAGCG- -5'
16433 3' -58.8 NC_004084.1 + 28381 0.69 0.410936
Target:  5'- gCGUuuCGACGUgCACCaUCuUCGCGUCGa -3'
miRNA:   3'- -GCG--GCUGCAgGUGG-AGcAGCGCAGCg -5'
16433 3' -58.8 NC_004084.1 + 28514 0.66 0.597296
Target:  5'- gGCuCGcACGUUCACCUC--UGCGUgGCc -3'
miRNA:   3'- gCG-GC-UGCAGGUGGAGcaGCGCAgCG- -5'
16433 3' -58.8 NC_004084.1 + 28724 0.66 0.597296
Target:  5'- aGCCaggacaGCGUCCGCgaC--CGCGUCGCg -3'
miRNA:   3'- gCGGc-----UGCAGGUGgaGcaGCGCAGCG- -5'
16433 3' -58.8 NC_004084.1 + 28927 0.76 0.147737
Target:  5'- aG-CGACGUCgGCCUCGggagCGCGUCGa -3'
miRNA:   3'- gCgGCUGCAGgUGGAGCa---GCGCAGCg -5'
16433 3' -58.8 NC_004084.1 + 29064 0.67 0.545584
Target:  5'- gGCCG-CGaCCGCCcgcUCGggggCGuCGUCGCc -3'
miRNA:   3'- gCGGCuGCaGGUGG---AGCa---GC-GCAGCG- -5'
16433 3' -58.8 NC_004084.1 + 29503 0.66 0.58687
Target:  5'- gGCCGACGU-CGCuCUCGggcacaccCGCuUCGCc -3'
miRNA:   3'- gCGGCUGCAgGUG-GAGCa-------GCGcAGCG- -5'
16433 3' -58.8 NC_004084.1 + 29699 0.67 0.525284
Target:  5'- uCGCgGACGcugUCCugGCUgaGUCGCGUCGUc -3'
miRNA:   3'- -GCGgCUGC---AGG--UGGagCAGCGCAGCG- -5'
16433 3' -58.8 NC_004084.1 + 29988 0.69 0.410936
Target:  5'- -aCCGGCGUCgACCUgGUCGCuggugacgacGUCaGCg -3'
miRNA:   3'- gcGGCUGCAGgUGGAgCAGCG----------CAG-CG- -5'
16433 3' -58.8 NC_004084.1 + 30767 0.67 0.545584
Target:  5'- aGUCGAgCGaCCuCCUCGagGCGUaCGCg -3'
miRNA:   3'- gCGGCU-GCaGGuGGAGCagCGCA-GCG- -5'
16433 3' -58.8 NC_004084.1 + 30909 0.71 0.343818
Target:  5'- aGCCGugGUCCuCCUggaagaCGUCGa-UCGCu -3'
miRNA:   3'- gCGGCugCAGGuGGA------GCAGCgcAGCG- -5'
16433 3' -58.8 NC_004084.1 + 31203 0.73 0.240235
Target:  5'- gCGUCGACGUCgucgcgaACCUCGagguacgcauUCaGCGUCGCg -3'
miRNA:   3'- -GCGGCUGCAGg------UGGAGC----------AG-CGCAGCG- -5'
16433 3' -58.8 NC_004084.1 + 32417 0.66 0.57648
Target:  5'- cCGUCGACGagcUCGCaCUCGUCGCGa--- -3'
miRNA:   3'- -GCGGCUGCa--GGUG-GAGCAGCGCagcg -5'
16433 3' -58.8 NC_004084.1 + 34052 0.66 0.575443
Target:  5'- aGUCGGC-UCgCAUCUCGaacucgagcguggUCGCGUUGCu -3'
miRNA:   3'- gCGGCUGcAG-GUGGAGC-------------AGCGCAGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.