miRNA display CGI


Results 61 - 80 of 102 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16433 3' -58.8 NC_004084.1 + 34700 0.66 0.618219
Target:  5'- gCGCUGGgguguCGUCCuuuCCgggCGUCGCcgguUCGCg -3'
miRNA:   3'- -GCGGCU-----GCAGGu--GGa--GCAGCGc---AGCG- -5'
16433 3' -58.8 NC_004084.1 + 35338 1.1 0.000566
Target:  5'- uCGCCGACGUCCACCUCGUCGCGUCGCc -3'
miRNA:   3'- -GCGGCUGCAGGUGGAGCAGCGCAGCG- -5'
16433 3' -58.8 NC_004084.1 + 35444 0.73 0.234346
Target:  5'- gGUCGACcaggacucgGUCgGCCUCGUCGCGagugUCGUg -3'
miRNA:   3'- gCGGCUG---------CAGgUGGAGCAGCGC----AGCG- -5'
16433 3' -58.8 NC_004084.1 + 35674 0.75 0.186661
Target:  5'- uCGUCGAUGUCCucguACCgcugggcggacuUCGUCGgGUCGCu -3'
miRNA:   3'- -GCGGCUGCAGG----UGG------------AGCAGCgCAGCG- -5'
16433 3' -58.8 NC_004084.1 + 36252 0.67 0.5354
Target:  5'- gGUCGACGUCCucgagugcGCCgaggCGcUCGCGgucagucaUCGCu -3'
miRNA:   3'- gCGGCUGCAGG--------UGGa---GC-AGCGC--------AGCG- -5'
16433 3' -58.8 NC_004084.1 + 36303 0.69 0.402111
Target:  5'- aGCCGgggauGCGaUUCGCCaauUCGUCuGCGUCGUa -3'
miRNA:   3'- gCGGC-----UGC-AGGUGG---AGCAG-CGCAGCG- -5'
16433 3' -58.8 NC_004084.1 + 36414 0.68 0.495395
Target:  5'- uGUCGAuguuCGUCCGCgCgUCGUCGaCGUaCGCc -3'
miRNA:   3'- gCGGCU----GCAGGUG-G-AGCAGC-GCA-GCG- -5'
16433 3' -58.8 NC_004084.1 + 36726 0.66 0.57648
Target:  5'- uCGCCGACGUCaGCUgUGcUCGCaaCGCa -3'
miRNA:   3'- -GCGGCUGCAGgUGGaGC-AGCGcaGCG- -5'
16433 3' -58.8 NC_004084.1 + 36881 0.7 0.381427
Target:  5'- aGCCGACGgaagaugcgaucgCCAuCCUCGagGCGUucUGCg -3'
miRNA:   3'- gCGGCUGCa------------GGU-GGAGCagCGCA--GCG- -5'
16433 3' -58.8 NC_004084.1 + 37517 0.67 0.55583
Target:  5'- aCGUCGAUGaUguCCUCGUCGUaGUUGUa -3'
miRNA:   3'- -GCGGCUGCaGguGGAGCAGCG-CAGCG- -5'
16433 3' -58.8 NC_004084.1 + 38851 0.68 0.456801
Target:  5'- gGUCuggGACGUCguCCUCGUCGagccagaGUUGCg -3'
miRNA:   3'- gCGG---CUGCAGguGGAGCAGCg------CAGCG- -5'
16433 3' -58.8 NC_004084.1 + 39583 0.68 0.505276
Target:  5'- uCGUCGACGaggUCCcgggcGCgCUUGUCugGCGUCGCc -3'
miRNA:   3'- -GCGGCUGC---AGG-----UG-GAGCAG--CGCAGCG- -5'
16433 3' -58.8 NC_004084.1 + 40450 0.68 0.485603
Target:  5'- gCGCCGACGauUCCGCCgUCaUCG-GUUGUu -3'
miRNA:   3'- -GCGGCUGC--AGGUGG-AGcAGCgCAGCG- -5'
16433 3' -58.8 NC_004084.1 + 40648 0.7 0.359836
Target:  5'- aCGUCGACGUCCAguacaugcUCUCGcCGCGgauccagaGCa -3'
miRNA:   3'- -GCGGCUGCAGGU--------GGAGCaGCGCag------CG- -5'
16433 3' -58.8 NC_004084.1 + 41233 0.66 0.58687
Target:  5'- gGCUGACGacaaugugCCucCCUCGccuUCGaCGUCGCc -3'
miRNA:   3'- gCGGCUGCa-------GGu-GGAGC---AGC-GCAGCG- -5'
16433 3' -58.8 NC_004084.1 + 42060 0.69 0.402111
Target:  5'- -aCCGAgcUCCACCacgcgaagcaacUCGUCGCgGUCGCg -3'
miRNA:   3'- gcGGCUgcAGGUGG------------AGCAGCG-CAGCG- -5'
16433 3' -58.8 NC_004084.1 + 42611 0.67 0.56613
Target:  5'- aGCCGACGUU--CCUCG--GCGUUGUc -3'
miRNA:   3'- gCGGCUGCAGguGGAGCagCGCAGCG- -5'
16433 3' -58.8 NC_004084.1 + 42710 0.67 0.55583
Target:  5'- uGCUGACG---ACCcUGUCGCGUCGg -3'
miRNA:   3'- gCGGCUGCaggUGGaGCAGCGCAGCg -5'
16433 3' -58.8 NC_004084.1 + 45270 0.66 0.607748
Target:  5'- aCGuUCGGuCGUCCGaaUCGUCGcCGUCGa -3'
miRNA:   3'- -GC-GGCU-GCAGGUggAGCAGC-GCAGCg -5'
16433 3' -58.8 NC_004084.1 + 46304 0.67 0.559944
Target:  5'- uCGUCGACGUugacuccguucgcgaUCAuucccauguCCUCGUCGC-UCGCc -3'
miRNA:   3'- -GCGGCUGCA---------------GGU---------GGAGCAGCGcAGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.