miRNA display CGI


Results 81 - 100 of 102 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16433 3' -58.8 NC_004084.1 + 46549 0.7 0.359836
Target:  5'- -uUCGACGUCCGgaUCGUCGUcgGUCGUg -3'
miRNA:   3'- gcGGCUGCAGGUggAGCAGCG--CAGCG- -5'
16433 3' -58.8 NC_004084.1 + 46734 0.66 0.618219
Target:  5'- aCGCCguguaGACGUCgCuguCCUCGcCGUagucGUCGCc -3'
miRNA:   3'- -GCGG-----CUGCAG-Gu--GGAGCaGCG----CAGCG- -5'
16433 3' -58.8 NC_004084.1 + 47360 0.77 0.132929
Target:  5'- uCGUCGGCGgCCGCCccuUCGUcCGCGUCGUc -3'
miRNA:   3'- -GCGGCUGCaGGUGG---AGCA-GCGCAGCG- -5'
16433 3' -58.8 NC_004084.1 + 48392 0.68 0.484629
Target:  5'- cCGUCGACGcggcaucguggCCGCCaucucggagaucuUCGUCGaCGUCGUc -3'
miRNA:   3'- -GCGGCUGCa----------GGUGG-------------AGCAGC-GCAGCG- -5'
16433 3' -58.8 NC_004084.1 + 49406 0.69 0.434434
Target:  5'- uCGUCGugGUCCucgaaccaggaguCCUCGUCGaacUCGUa -3'
miRNA:   3'- -GCGGCugCAGGu------------GGAGCAGCgc-AGCG- -5'
16433 3' -58.8 NC_004084.1 + 49824 0.67 0.534385
Target:  5'- aGCCucGACGagUUCAUcgaaucaCUCGUCGaCGUCGCg -3'
miRNA:   3'- gCGG--CUGC--AGGUG-------GAGCAGC-GCAGCG- -5'
16433 3' -58.8 NC_004084.1 + 49991 0.74 0.222934
Target:  5'- gGuuGACGUCCGCCUCGcccaugaucaCGuUGUCGCc -3'
miRNA:   3'- gCggCUGCAGGUGGAGCa---------GC-GCAGCG- -5'
16433 3' -58.8 NC_004084.1 + 50518 0.71 0.30605
Target:  5'- gCGCCGACuGUCuCGgUUCGgaUCGCGUCGa -3'
miRNA:   3'- -GCGGCUG-CAG-GUgGAGC--AGCGCAGCg -5'
16433 3' -58.8 NC_004084.1 + 50765 0.69 0.428942
Target:  5'- uCGCCGuCGUCCGgcuCUUCGUCaGCGUUc- -3'
miRNA:   3'- -GCGGCuGCAGGU---GGAGCAG-CGCAGcg -5'
16433 3' -58.8 NC_004084.1 + 50931 0.68 0.465347
Target:  5'- gGCCGAcuugcuCGUCuCGCCUucgcCGUCGCcgcucgaGUCGCc -3'
miRNA:   3'- gCGGCU------GCAG-GUGGA----GCAGCG-------CAGCG- -5'
16433 3' -58.8 NC_004084.1 + 50998 0.68 0.505276
Target:  5'- cCGUCGGCaUCgC-CCUCGUCGuCGaUCGCc -3'
miRNA:   3'- -GCGGCUGcAG-GuGGAGCAGC-GC-AGCG- -5'
16433 3' -58.8 NC_004084.1 + 51520 0.71 0.336003
Target:  5'- aCGuCCGACucgagcgCCAUUUCGaUCGCGUCGUg -3'
miRNA:   3'- -GC-GGCUGca-----GGUGGAGC-AGCGCAGCG- -5'
16433 3' -58.8 NC_004084.1 + 51720 0.74 0.217406
Target:  5'- uCGCCGGCGUUgACCUCGagaUgGaCGUCGUc -3'
miRNA:   3'- -GCGGCUGCAGgUGGAGC---AgC-GCAGCG- -5'
16433 3' -58.8 NC_004084.1 + 51829 0.71 0.30605
Target:  5'- cCGCCGACugucgCCACuCUCGaagagCGCGUgGCu -3'
miRNA:   3'- -GCGGCUGca---GGUG-GAGCa----GCGCAgCG- -5'
16433 3' -58.8 NC_004084.1 + 52091 0.76 0.151667
Target:  5'- uCGCCGACGUuaCCGCCgggaUGUCGaCGUCGg -3'
miRNA:   3'- -GCGGCUGCA--GGUGGa---GCAGC-GCAGCg -5'
16433 3' -58.8 NC_004084.1 + 52950 0.71 0.336003
Target:  5'- cCGUCGGCGUCguCgugaUCGUCGCGagugCGCu -3'
miRNA:   3'- -GCGGCUGCAGguGg---AGCAGCGCa---GCG- -5'
16433 3' -58.8 NC_004084.1 + 53168 0.66 0.607748
Target:  5'- gGCCGAUGaCUgACCccagcguguUCGUC-CGUCGCg -3'
miRNA:   3'- gCGGCUGCaGG-UGG---------AGCAGcGCAGCG- -5'
16433 3' -58.8 NC_004084.1 + 54798 0.68 0.473975
Target:  5'- aGCCGAUcgccucguagucgGUCCagGCCgucuggaggacguUCGUCGCgGUCGCc -3'
miRNA:   3'- gCGGCUG-------------CAGG--UGG-------------AGCAGCG-CAGCG- -5'
16433 3' -58.8 NC_004084.1 + 55818 0.71 0.320765
Target:  5'- aCGUCGAC-UUCACCUCG--GCGUCGUc -3'
miRNA:   3'- -GCGGCUGcAGGUGGAGCagCGCAGCG- -5'
16433 3' -58.8 NC_004084.1 + 56115 0.71 0.313342
Target:  5'- uCGUCGACGUCgugCGCCgcagugUCGUCGgCGUCGa -3'
miRNA:   3'- -GCGGCUGCAG---GUGG------AGCAGC-GCAGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.