miRNA display CGI


Results 61 - 80 of 102 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16433 3' -58.8 NC_004084.1 + 26222 0.68 0.475903
Target:  5'- aCGaCUGGC-UCCACCaaccgcuguUCGUCGgGUCGUu -3'
miRNA:   3'- -GC-GGCUGcAGGUGG---------AGCAGCgCAGCG- -5'
16433 3' -58.8 NC_004084.1 + 23362 0.68 0.485603
Target:  5'- gGUCGACGUCgACgUUCGgaUC-CGUCGCg -3'
miRNA:   3'- gCGGCUGCAGgUG-GAGC--AGcGCAGCG- -5'
16433 3' -58.8 NC_004084.1 + 23150 0.66 0.57648
Target:  5'- uCGCCGAcucguccauCGUCCAuCCUgGUCGUcccagaggugGUCGa -3'
miRNA:   3'- -GCGGCU---------GCAGGU-GGAgCAGCG----------CAGCg -5'
16433 3' -58.8 NC_004084.1 + 22331 0.68 0.466302
Target:  5'- uCGUaggaGACGgCgACCUCGUCGCGguccUCGUc -3'
miRNA:   3'- -GCGg---CUGCaGgUGGAGCAGCGC----AGCG- -5'
16433 3' -58.8 NC_004084.1 + 21801 0.67 0.545584
Target:  5'- aGCCGAUG--CACCUcaaCGUCaGCGUCGa -3'
miRNA:   3'- gCGGCUGCagGUGGA---GCAG-CGCAGCg -5'
16433 3' -58.8 NC_004084.1 + 21484 0.74 0.211997
Target:  5'- gGgCGGCGaUCGCCUCgGUUGCGUCGUa -3'
miRNA:   3'- gCgGCUGCaGGUGGAG-CAGCGCAGCG- -5'
16433 3' -58.8 NC_004084.1 + 20995 0.68 0.482683
Target:  5'- cCGCCGcuaucgagauccaaGCGUCCAUCaUCGgccaGCGUCuGCc -3'
miRNA:   3'- -GCGGC--------------UGCAGGUGG-AGCag--CGCAG-CG- -5'
16433 3' -58.8 NC_004084.1 + 19968 0.78 0.1195
Target:  5'- gGCCGugGUUgACgaCGUCGaCGUCGCg -3'
miRNA:   3'- gCGGCugCAGgUGgaGCAGC-GCAGCG- -5'
16433 3' -58.8 NC_004084.1 + 18631 0.7 0.384825
Target:  5'- uCGCCGAguUGgCCgACCUCGUCGcCGUCu- -3'
miRNA:   3'- -GCGGCU--GCaGG-UGGAGCAGC-GCAGcg -5'
16433 3' -58.8 NC_004084.1 + 17836 0.69 0.428031
Target:  5'- uCGCCGA-GUUCgauggugACCUCGUCGCc-CGCa -3'
miRNA:   3'- -GCGGCUgCAGG-------UGGAGCAGCGcaGCG- -5'
16433 3' -58.8 NC_004084.1 + 17507 0.67 0.5354
Target:  5'- aGCUGcuccuCGUCCaggGCCUCca-GCGUCGCc -3'
miRNA:   3'- gCGGCu----GCAGG---UGGAGcagCGCAGCG- -5'
16433 3' -58.8 NC_004084.1 + 17030 0.66 0.606702
Target:  5'- gCGaCCGAgCGUCUgcGCC-CGUCGaugcggugacugaCGUCGCa -3'
miRNA:   3'- -GC-GGCU-GCAGG--UGGaGCAGC-------------GCAGCG- -5'
16433 3' -58.8 NC_004084.1 + 16962 0.72 0.291858
Target:  5'- uCGCCGGCcaCUgcaagACCUCGaUCGCGUCGg -3'
miRNA:   3'- -GCGGCUGcaGG-----UGGAGC-AGCGCAGCg -5'
16433 3' -58.8 NC_004084.1 + 16790 0.71 0.328319
Target:  5'- aCGUCGAUGUCCcggaC-CGUCGCcUCGCg -3'
miRNA:   3'- -GCGGCUGCAGGug--GaGCAGCGcAGCG- -5'
16433 3' -58.8 NC_004084.1 + 16649 0.71 0.304608
Target:  5'- uCGUCGACGUCguccgggagguCCUCGUCgccgGCGUCGUc -3'
miRNA:   3'- -GCGGCUGCAGgu---------GGAGCAG----CGCAGCG- -5'
16433 3' -58.8 NC_004084.1 + 16085 0.72 0.284958
Target:  5'- cCGCCGccuCGUCgAUCUCGUCccgacgguCGUCGCg -3'
miRNA:   3'- -GCGGCu--GCAGgUGGAGCAGc-------GCAGCG- -5'
16433 3' -58.8 NC_004084.1 + 15682 0.71 0.336003
Target:  5'- gGCCGAUGUCCuucGCCUgcUCGCGaUCGg -3'
miRNA:   3'- gCGGCUGCAGG---UGGAgcAGCGC-AGCg -5'
16433 3' -58.8 NC_004084.1 + 15399 0.67 0.523269
Target:  5'- cCGCUuGCGUCUcguuggggaacuCCUCGaUCGCGUCGa -3'
miRNA:   3'- -GCGGcUGCAGGu-----------GGAGC-AGCGCAGCg -5'
16433 3' -58.8 NC_004084.1 + 14718 0.72 0.298889
Target:  5'- aGCUGA--UCCACUUCGUCGacgcgcccgucCGUCGCa -3'
miRNA:   3'- gCGGCUgcAGGUGGAGCAGC-----------GCAGCG- -5'
16433 3' -58.8 NC_004084.1 + 14155 0.66 0.597296
Target:  5'- uCGCCGuCGUCgugaagGCCggUCGUCcCGUCGUa -3'
miRNA:   3'- -GCGGCuGCAGg-----UGG--AGCAGcGCAGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.