miRNA display CGI


Results 1 - 20 of 102 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16433 3' -58.8 NC_004084.1 + 49824 0.67 0.534385
Target:  5'- aGCCucGACGagUUCAUcgaaucaCUCGUCGaCGUCGCg -3'
miRNA:   3'- gCGG--CUGC--AGGUG-------GAGCAGC-GCAGCG- -5'
16433 3' -58.8 NC_004084.1 + 28381 0.69 0.410936
Target:  5'- gCGUuuCGACGUgCACCaUCuUCGCGUCGa -3'
miRNA:   3'- -GCG--GCUGCAgGUGG-AGcAGCGCAGCg -5'
16433 3' -58.8 NC_004084.1 + 56931 0.69 0.410936
Target:  5'- gGgCGACGUCUACCaggaggUCGUCGa-UCGCc -3'
miRNA:   3'- gCgGCUGCAGGUGG------AGCAGCgcAGCG- -5'
16433 3' -58.8 NC_004084.1 + 28160 0.69 0.438118
Target:  5'- gGCUGGaauaGUCCGuCCUCGgccuguUCGaCGUCGCc -3'
miRNA:   3'- gCGGCUg---CAGGU-GGAGC------AGC-GCAGCG- -5'
16433 3' -58.8 NC_004084.1 + 3071 0.69 0.447406
Target:  5'- uCGUCGACGggCCG-CUCGUCGaCGUgCGUu -3'
miRNA:   3'- -GCGGCUGCa-GGUgGAGCAGC-GCA-GCG- -5'
16433 3' -58.8 NC_004084.1 + 26222 0.68 0.475903
Target:  5'- aCGaCUGGC-UCCACCaaccgcuguUCGUCGgGUCGUu -3'
miRNA:   3'- -GC-GGCUGcAGGUGG---------AGCAGCgCAGCG- -5'
16433 3' -58.8 NC_004084.1 + 9383 0.68 0.475903
Target:  5'- uGCCGuccCGUCCcguCCaggaCGUCGUGUCGg -3'
miRNA:   3'- gCGGCu--GCAGGu--GGa---GCAGCGCAGCg -5'
16433 3' -58.8 NC_004084.1 + 9071 0.68 0.485603
Target:  5'- aCGUCGACGaUCACCUCGaCaCGaUCGCc -3'
miRNA:   3'- -GCGGCUGCaGGUGGAGCaGcGC-AGCG- -5'
16433 3' -58.8 NC_004084.1 + 29699 0.67 0.525284
Target:  5'- uCGCgGACGcugUCCugGCUgaGUCGCGUCGUc -3'
miRNA:   3'- -GCGgCUGC---AGG--UGGagCAGCGCAGCG- -5'
16433 3' -58.8 NC_004084.1 + 28091 0.69 0.405626
Target:  5'- uCGCCGACGgucaacgguucggggUgCGCCUCGacgagCGCGUCa- -3'
miRNA:   3'- -GCGGCUGC---------------AgGUGGAGCa----GCGCAGcg -5'
16433 3' -58.8 NC_004084.1 + 42060 0.69 0.402111
Target:  5'- -aCCGAgcUCCACCacgcgaagcaacUCGUCGCgGUCGCg -3'
miRNA:   3'- gcGGCUgcAGGUGG------------AGCAGCG-CAGCG- -5'
16433 3' -58.8 NC_004084.1 + 36881 0.7 0.381427
Target:  5'- aGCCGACGgaagaugcgaucgCCAuCCUCGagGCGUucUGCg -3'
miRNA:   3'- gCGGCUGCa------------GGU-GGAGCagCGCA--GCG- -5'
16433 3' -58.8 NC_004084.1 + 47360 0.77 0.132929
Target:  5'- uCGUCGGCGgCCGCCccuUCGUcCGCGUCGUc -3'
miRNA:   3'- -GCGGCUGCaGGUGG---AGCA-GCGCAGCG- -5'
16433 3' -58.8 NC_004084.1 + 28927 0.76 0.147737
Target:  5'- aG-CGACGUCgGCCUCGggagCGCGUCGa -3'
miRNA:   3'- gCgGCUGCAGgUGGAGCa---GCGCAGCg -5'
16433 3' -58.8 NC_004084.1 + 5482 0.76 0.151667
Target:  5'- aCGCCGACGgCCAgaUCGUCGCaGUCGa -3'
miRNA:   3'- -GCGGCUGCaGGUggAGCAGCG-CAGCg -5'
16433 3' -58.8 NC_004084.1 + 51720 0.74 0.217406
Target:  5'- uCGCCGGCGUUgACCUCGagaUgGaCGUCGUc -3'
miRNA:   3'- -GCGGCUGCAGgUGGAGC---AgC-GCAGCG- -5'
16433 3' -58.8 NC_004084.1 + 31203 0.73 0.240235
Target:  5'- gCGUCGACGUCgucgcgaACCUCGagguacgcauUCaGCGUCGCg -3'
miRNA:   3'- -GCGGCUGCAGg------UGGAGC----------AG-CGCAGCG- -5'
16433 3' -58.8 NC_004084.1 + 16962 0.72 0.291858
Target:  5'- uCGCCGGCcaCUgcaagACCUCGaUCGCGUCGg -3'
miRNA:   3'- -GCGGCUGcaGG-----UGGAGC-AGCGCAGCg -5'
16433 3' -58.8 NC_004084.1 + 51829 0.71 0.30605
Target:  5'- cCGCCGACugucgCCACuCUCGaagagCGCGUgGCu -3'
miRNA:   3'- -GCGGCUGca---GGUG-GAGCa----GCGCAgCG- -5'
16433 3' -58.8 NC_004084.1 + 40648 0.7 0.359836
Target:  5'- aCGUCGACGUCCAguacaugcUCUCGcCGCGgauccagaGCa -3'
miRNA:   3'- -GCGGCUGCAGGU--------GGAGCaGCGCag------CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.