miRNA display CGI


Results 61 - 80 of 102 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16433 3' -58.8 NC_004084.1 + 28514 0.66 0.597296
Target:  5'- gGCuCGcACGUUCACCUC--UGCGUgGCc -3'
miRNA:   3'- gCG-GC-UGCAGGUGGAGcaGCGCAgCG- -5'
16433 3' -58.8 NC_004084.1 + 28724 0.66 0.597296
Target:  5'- aGCCaggacaGCGUCCGCgaC--CGCGUCGCg -3'
miRNA:   3'- gCGGc-----UGCAGGUGgaGcaGCGCAGCG- -5'
16433 3' -58.8 NC_004084.1 + 5252 0.66 0.597296
Target:  5'- aCGCUGGgGUCagucaucgGCCUCGUCGaCGaCGUc -3'
miRNA:   3'- -GCGGCUgCAGg-------UGGAGCAGC-GCaGCG- -5'
16433 3' -58.8 NC_004084.1 + 12858 0.66 0.597296
Target:  5'- cCGUCGGCGuacUCCGCUUCGagGuCcUCGCg -3'
miRNA:   3'- -GCGGCUGC---AGGUGGAGCagC-GcAGCG- -5'
16433 3' -58.8 NC_004084.1 + 14155 0.66 0.597296
Target:  5'- uCGCCGuCGUCgugaagGCCggUCGUCcCGUCGUa -3'
miRNA:   3'- -GCGGCuGCAGg-----UGG--AGCAGcGCAGCG- -5'
16433 3' -58.8 NC_004084.1 + 45270 0.66 0.607748
Target:  5'- aCGuUCGGuCGUCCGaaUCGUCGcCGUCGa -3'
miRNA:   3'- -GC-GGCU-GCAGGUggAGCAGC-GCAGCg -5'
16433 3' -58.8 NC_004084.1 + 14087 0.66 0.607748
Target:  5'- aCGuaGACGUCgAUgUCGUCGUGgcgGCa -3'
miRNA:   3'- -GCggCUGCAGgUGgAGCAGCGCag-CG- -5'
16433 3' -58.8 NC_004084.1 + 1100 0.66 0.618219
Target:  5'- cCGCUuuguaGGCGUCCcCCUCGUCGaggagGUCc- -3'
miRNA:   3'- -GCGG-----CUGCAGGuGGAGCAGCg----CAGcg -5'
16433 3' -58.8 NC_004084.1 + 8727 0.66 0.58687
Target:  5'- -cUCGGCGUCaC-CCUCGUgGaUGUCGCc -3'
miRNA:   3'- gcGGCUGCAG-GuGGAGCAgC-GCAGCG- -5'
16433 3' -58.8 NC_004084.1 + 36726 0.66 0.57648
Target:  5'- uCGCCGACGUCaGCUgUGcUCGCaaCGCa -3'
miRNA:   3'- -GCGGCUGCAGgUGGaGC-AGCGcaGCG- -5'
16433 3' -58.8 NC_004084.1 + 15399 0.67 0.523269
Target:  5'- cCGCUuGCGUCUcguuggggaacuCCUCGaUCGCGUCGa -3'
miRNA:   3'- -GCGGcUGCAGGu-----------GGAGC-AGCGCAGCg -5'
16433 3' -58.8 NC_004084.1 + 17507 0.67 0.5354
Target:  5'- aGCUGcuccuCGUCCaggGCCUCca-GCGUCGCc -3'
miRNA:   3'- gCGGCu----GCAGG---UGGAGcagCGCAGCG- -5'
16433 3' -58.8 NC_004084.1 + 983 0.67 0.5354
Target:  5'- uCGCUGAguucgagguguUGUCCACCUCGa-GC-UCGCc -3'
miRNA:   3'- -GCGGCU-----------GCAGGUGGAGCagCGcAGCG- -5'
16433 3' -58.8 NC_004084.1 + 36252 0.67 0.5354
Target:  5'- gGUCGACGUCCucgagugcGCCgaggCGcUCGCGgucagucaUCGCu -3'
miRNA:   3'- gCGGCUGCAGG--------UGGa---GC-AGCGC--------AGCG- -5'
16433 3' -58.8 NC_004084.1 + 37517 0.67 0.55583
Target:  5'- aCGUCGAUGaUguCCUCGUCGUaGUUGUa -3'
miRNA:   3'- -GCGGCUGCaGguGGAGCAGCG-CAGCG- -5'
16433 3' -58.8 NC_004084.1 + 42710 0.67 0.55583
Target:  5'- uGCUGACG---ACCcUGUCGCGUCGg -3'
miRNA:   3'- gCGGCUGCaggUGGaGCAGCGCAGCg -5'
16433 3' -58.8 NC_004084.1 + 46304 0.67 0.559944
Target:  5'- uCGUCGACGUugacuccguucgcgaUCAuucccauguCCUCGUCGC-UCGCc -3'
miRNA:   3'- -GCGGCUGCA---------------GGU---------GGAGCAGCGcAGCG- -5'
16433 3' -58.8 NC_004084.1 + 6689 0.67 0.56613
Target:  5'- uCGaCGACGUCCAUCUCGagGUcaaCGCc -3'
miRNA:   3'- -GCgGCUGCAGGUGGAGCagCGca-GCG- -5'
16433 3' -58.8 NC_004084.1 + 34052 0.66 0.575443
Target:  5'- aGUCGGC-UCgCAUCUCGaacucgagcguggUCGCGUUGCu -3'
miRNA:   3'- gCGGCUGcAG-GUGGAGC-------------AGCGCAGCG- -5'
16433 3' -58.8 NC_004084.1 + 23150 0.66 0.57648
Target:  5'- uCGCCGAcucguccauCGUCCAuCCUgGUCGUcccagaggugGUCGa -3'
miRNA:   3'- -GCGGCU---------GCAGGU-GGAgCAGCG----------CAGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.