Results 81 - 100 of 102 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16433 | 3' | -58.8 | NC_004084.1 | + | 45270 | 0.66 | 0.607748 |
Target: 5'- aCGuUCGGuCGUCCGaaUCGUCGcCGUCGa -3' miRNA: 3'- -GC-GGCU-GCAGGUggAGCAGC-GCAGCg -5' |
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16433 | 3' | -58.8 | NC_004084.1 | + | 14087 | 0.66 | 0.607748 |
Target: 5'- aCGuaGACGUCgAUgUCGUCGUGgcgGCa -3' miRNA: 3'- -GCggCUGCAGgUGgAGCAGCGCag-CG- -5' |
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16433 | 3' | -58.8 | NC_004084.1 | + | 1100 | 0.66 | 0.618219 |
Target: 5'- cCGCUuuguaGGCGUCCcCCUCGUCGaggagGUCc- -3' miRNA: 3'- -GCGG-----CUGCAGGuGGAGCAGCg----CAGcg -5' |
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16433 | 3' | -58.8 | NC_004084.1 | + | 46304 | 0.67 | 0.559944 |
Target: 5'- uCGUCGACGUugacuccguucgcgaUCAuucccauguCCUCGUCGC-UCGCc -3' miRNA: 3'- -GCGGCUGCA---------------GGU---------GGAGCAGCGcAGCG- -5' |
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16433 | 3' | -58.8 | NC_004084.1 | + | 42710 | 0.67 | 0.55583 |
Target: 5'- uGCUGACG---ACCcUGUCGCGUCGg -3' miRNA: 3'- gCGGCUGCaggUGGaGCAGCGCAGCg -5' |
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16433 | 3' | -58.8 | NC_004084.1 | + | 57857 | 0.68 | 0.475903 |
Target: 5'- gGCCGGgaaGauccCCGCCUUGUCGCaGUCGa -3' miRNA: 3'- gCGGCUg--Ca---GGUGGAGCAGCG-CAGCg -5' |
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16433 | 3' | -58.8 | NC_004084.1 | + | 20995 | 0.68 | 0.482683 |
Target: 5'- cCGCCGcuaucgagauccaaGCGUCCAUCaUCGgccaGCGUCuGCc -3' miRNA: 3'- -GCGGC--------------UGCAGGUGG-AGCag--CGCAG-CG- -5' |
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16433 | 3' | -58.8 | NC_004084.1 | + | 48392 | 0.68 | 0.484629 |
Target: 5'- cCGUCGACGcggcaucguggCCGCCaucucggagaucuUCGUCGaCGUCGUc -3' miRNA: 3'- -GCGGCUGCa----------GGUGG-------------AGCAGC-GCAGCG- -5' |
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16433 | 3' | -58.8 | NC_004084.1 | + | 23362 | 0.68 | 0.485603 |
Target: 5'- gGUCGACGUCgACgUUCGgaUC-CGUCGCg -3' miRNA: 3'- gCGGCUGCAGgUG-GAGC--AGcGCAGCG- -5' |
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16433 | 3' | -58.8 | NC_004084.1 | + | 40450 | 0.68 | 0.485603 |
Target: 5'- gCGCCGACGauUCCGCCgUCaUCG-GUUGUu -3' miRNA: 3'- -GCGGCUGC--AGGUGG-AGcAGCgCAGCG- -5' |
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16433 | 3' | -58.8 | NC_004084.1 | + | 36414 | 0.68 | 0.495395 |
Target: 5'- uGUCGAuguuCGUCCGCgCgUCGUCGaCGUaCGCc -3' miRNA: 3'- gCGGCU----GCAGGUG-G-AGCAGC-GCA-GCG- -5' |
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16433 | 3' | -58.8 | NC_004084.1 | + | 39583 | 0.68 | 0.505276 |
Target: 5'- uCGUCGACGaggUCCcgggcGCgCUUGUCugGCGUCGCc -3' miRNA: 3'- -GCGGCUGC---AGG-----UG-GAGCAG--CGCAGCG- -5' |
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16433 | 3' | -58.8 | NC_004084.1 | + | 50998 | 0.68 | 0.505276 |
Target: 5'- cCGUCGGCaUCgC-CCUCGUCGuCGaUCGCc -3' miRNA: 3'- -GCGGCUGcAG-GuGGAGCAGC-GC-AGCG- -5' |
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16433 | 3' | -58.8 | NC_004084.1 | + | 10386 | 0.67 | 0.515241 |
Target: 5'- -uUCGACGUCgAgCUCGUCGuCGUC-Ca -3' miRNA: 3'- gcGGCUGCAGgUgGAGCAGC-GCAGcG- -5' |
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16433 | 3' | -58.8 | NC_004084.1 | + | 5145 | 0.67 | 0.515241 |
Target: 5'- uCGCCagGACGUCgCccggcccgAUCUCGUCGcCGUCGa -3' miRNA: 3'- -GCGG--CUGCAG-G--------UGGAGCAGC-GCAGCg -5' |
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16433 | 3' | -58.8 | NC_004084.1 | + | 15399 | 0.67 | 0.523269 |
Target: 5'- cCGCUuGCGUCUcguuggggaacuCCUCGaUCGCGUCGa -3' miRNA: 3'- -GCGGcUGCAGGu-----------GGAGC-AGCGCAGCg -5' |
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16433 | 3' | -58.8 | NC_004084.1 | + | 17507 | 0.67 | 0.5354 |
Target: 5'- aGCUGcuccuCGUCCaggGCCUCca-GCGUCGCc -3' miRNA: 3'- gCGGCu----GCAGG---UGGAGcagCGCAGCG- -5' |
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16433 | 3' | -58.8 | NC_004084.1 | + | 983 | 0.67 | 0.5354 |
Target: 5'- uCGCUGAguucgagguguUGUCCACCUCGa-GC-UCGCc -3' miRNA: 3'- -GCGGCU-----------GCAGGUGGAGCagCGcAGCG- -5' |
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16433 | 3' | -58.8 | NC_004084.1 | + | 36252 | 0.67 | 0.5354 |
Target: 5'- gGUCGACGUCCucgagugcGCCgaggCGcUCGCGgucagucaUCGCu -3' miRNA: 3'- gCGGCUGCAGG--------UGGa---GC-AGCGC--------AGCG- -5' |
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16433 | 3' | -58.8 | NC_004084.1 | + | 37517 | 0.67 | 0.55583 |
Target: 5'- aCGUCGAUGaUguCCUCGUCGUaGUUGUa -3' miRNA: 3'- -GCGGCUGCaGguGGAGCAGCG-CAGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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