miRNA display CGI


Results 21 - 40 of 102 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16433 3' -58.8 NC_004084.1 + 15399 0.67 0.523269
Target:  5'- cCGCUuGCGUCUcguuggggaacuCCUCGaUCGCGUCGa -3'
miRNA:   3'- -GCGGcUGCAGGu-----------GGAGC-AGCGCAGCg -5'
16433 3' -58.8 NC_004084.1 + 17507 0.67 0.5354
Target:  5'- aGCUGcuccuCGUCCaggGCCUCca-GCGUCGCc -3'
miRNA:   3'- gCGGCu----GCAGG---UGGAGcagCGCAGCG- -5'
16433 3' -58.8 NC_004084.1 + 46304 0.67 0.559944
Target:  5'- uCGUCGACGUugacuccguucgcgaUCAuucccauguCCUCGUCGC-UCGCc -3'
miRNA:   3'- -GCGGCUGCA---------------GGU---------GGAGCAGCGcAGCG- -5'
16433 3' -58.8 NC_004084.1 + 36726 0.66 0.57648
Target:  5'- uCGCCGACGUCaGCUgUGcUCGCaaCGCa -3'
miRNA:   3'- -GCGGCUGCAGgUGGaGC-AGCGcaGCG- -5'
16433 3' -58.8 NC_004084.1 + 22331 0.68 0.466302
Target:  5'- uCGUaggaGACGgCgACCUCGUCGCGguccUCGUc -3'
miRNA:   3'- -GCGg---CUGCaGgUGGAGCAGCGC----AGCG- -5'
16433 3' -58.8 NC_004084.1 + 36414 0.68 0.495395
Target:  5'- uGUCGAuguuCGUCCGCgCgUCGUCGaCGUaCGCc -3'
miRNA:   3'- gCGGCU----GCAGGUG-G-AGCAGC-GCA-GCG- -5'
16433 3' -58.8 NC_004084.1 + 36252 0.67 0.5354
Target:  5'- gGUCGACGUCCucgagugcGCCgaggCGcUCGCGgucagucaUCGCu -3'
miRNA:   3'- gCGGCUGCAGG--------UGGa---GC-AGCGC--------AGCG- -5'
16433 3' -58.8 NC_004084.1 + 8727 0.66 0.58687
Target:  5'- -cUCGGCGUCaC-CCUCGUgGaUGUCGCc -3'
miRNA:   3'- gcGGCUGCAG-GuGGAGCAgC-GCAGCG- -5'
16433 3' -58.8 NC_004084.1 + 39583 0.68 0.505276
Target:  5'- uCGUCGACGaggUCCcgggcGCgCUUGUCugGCGUCGCc -3'
miRNA:   3'- -GCGGCUGC---AGG-----UG-GAGCAG--CGCAGCG- -5'
16433 3' -58.8 NC_004084.1 + 29503 0.66 0.58687
Target:  5'- gGCCGACGU-CGCuCUCGggcacaccCGCuUCGCc -3'
miRNA:   3'- gCGGCUGCAgGUG-GAGCa-------GCGcAGCG- -5'
16433 3' -58.8 NC_004084.1 + 983 0.67 0.5354
Target:  5'- uCGCUGAguucgagguguUGUCCACCUCGa-GC-UCGCc -3'
miRNA:   3'- -GCGGCU-----------GCAGGUGGAGCagCGcAGCG- -5'
16433 3' -58.8 NC_004084.1 + 5145 0.67 0.515241
Target:  5'- uCGCCagGACGUCgCccggcccgAUCUCGUCGcCGUCGa -3'
miRNA:   3'- -GCGG--CUGCAG-G--------UGGAGCAGC-GCAGCg -5'
16433 3' -58.8 NC_004084.1 + 37517 0.67 0.55583
Target:  5'- aCGUCGAUGaUguCCUCGUCGUaGUUGUa -3'
miRNA:   3'- -GCGGCUGCaGguGGAGCAGCG-CAGCG- -5'
16433 3' -58.8 NC_004084.1 + 42710 0.67 0.55583
Target:  5'- uGCUGACG---ACCcUGUCGCGUCGg -3'
miRNA:   3'- gCGGCUGCaggUGGaGCAGCGCAGCg -5'
16433 3' -58.8 NC_004084.1 + 6689 0.67 0.56613
Target:  5'- uCGaCGACGUCCAUCUCGagGUcaaCGCc -3'
miRNA:   3'- -GCgGCUGCAGGUGGAGCagCGca-GCG- -5'
16433 3' -58.8 NC_004084.1 + 23150 0.66 0.57648
Target:  5'- uCGCCGAcucguccauCGUCCAuCCUgGUCGUcccagaggugGUCGa -3'
miRNA:   3'- -GCGGCU---------GCAGGU-GGAgCAGCG----------CAGCg -5'
16433 3' -58.8 NC_004084.1 + 673 0.69 0.438118
Target:  5'- uGUgGAUGUCgGCUUCGUCGaCGUCc- -3'
miRNA:   3'- gCGgCUGCAGgUGGAGCAGC-GCAGcg -5'
16433 3' -58.8 NC_004084.1 + 50931 0.68 0.465347
Target:  5'- gGCCGAcuugcuCGUCuCGCCUucgcCGUCGCcgcucgaGUCGCc -3'
miRNA:   3'- gCGGCU------GCAG-GUGGA----GCAGCG-------CAGCG- -5'
16433 3' -58.8 NC_004084.1 + 20995 0.68 0.482683
Target:  5'- cCGCCGcuaucgagauccaaGCGUCCAUCaUCGgccaGCGUCuGCc -3'
miRNA:   3'- -GCGGC--------------UGCAGGUGG-AGCag--CGCAG-CG- -5'
16433 3' -58.8 NC_004084.1 + 40450 0.68 0.485603
Target:  5'- gCGCCGACGauUCCGCCgUCaUCG-GUUGUu -3'
miRNA:   3'- -GCGGCUGC--AGGUGG-AGcAGCgCAGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.