miRNA display CGI


Results 41 - 60 of 102 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16433 3' -58.8 NC_004084.1 + 27573 0.7 0.384825
Target:  5'- aGCgGGcCGcCCACCUCuuUCGaCGUCGCg -3'
miRNA:   3'- gCGgCU-GCaGGUGGAGc-AGC-GCAGCG- -5'
16433 3' -58.8 NC_004084.1 + 49406 0.69 0.434434
Target:  5'- uCGUCGugGUCCucgaaccaggaguCCUCGUCGaacUCGUa -3'
miRNA:   3'- -GCGGCugCAGGu------------GGAGCAGCgc-AGCG- -5'
16433 3' -58.8 NC_004084.1 + 20995 0.68 0.482683
Target:  5'- cCGCCGcuaucgagauccaaGCGUCCAUCaUCGgccaGCGUCuGCc -3'
miRNA:   3'- -GCGGC--------------UGCAGGUGG-AGCag--CGCAG-CG- -5'
16433 3' -58.8 NC_004084.1 + 18631 0.7 0.384825
Target:  5'- uCGCCGAguUGgCCgACCUCGUCGcCGUCu- -3'
miRNA:   3'- -GCGGCU--GCaGG-UGGAGCAGC-GCAGcg -5'
16433 3' -58.8 NC_004084.1 + 48392 0.68 0.484629
Target:  5'- cCGUCGACGcggcaucguggCCGCCaucucggagaucuUCGUCGaCGUCGUc -3'
miRNA:   3'- -GCGGCUGCa----------GGUGG-------------AGCAGC-GCAGCG- -5'
16433 3' -58.8 NC_004084.1 + 16649 0.71 0.304608
Target:  5'- uCGUCGACGUCguccgggagguCCUCGUCgccgGCGUCGUc -3'
miRNA:   3'- -GCGGCUGCAGgu---------GGAGCAG----CGCAGCG- -5'
16433 3' -58.8 NC_004084.1 + 54798 0.68 0.473975
Target:  5'- aGCCGAUcgccucguagucgGUCCagGCCgucuggaggacguUCGUCGCgGUCGCc -3'
miRNA:   3'- gCGGCUG-------------CAGG--UGG-------------AGCAGCG-CAGCG- -5'
16433 3' -58.8 NC_004084.1 + 50518 0.71 0.30605
Target:  5'- gCGCCGACuGUCuCGgUUCGgaUCGCGUCGa -3'
miRNA:   3'- -GCGGCUG-CAG-GUgGAGC--AGCGCAGCg -5'
16433 3' -58.8 NC_004084.1 + 56115 0.71 0.313342
Target:  5'- uCGUCGACGUCgugCGCCgcagugUCGUCGgCGUCGa -3'
miRNA:   3'- -GCGGCUGCAG---GUGG------AGCAGC-GCAGCg -5'
16433 3' -58.8 NC_004084.1 + 15682 0.71 0.336003
Target:  5'- gGCCGAUGUCCuucGCCUgcUCGCGaUCGg -3'
miRNA:   3'- gCGGCUGCAGG---UGGAgcAGCGC-AGCg -5'
16433 3' -58.8 NC_004084.1 + 51520 0.71 0.336003
Target:  5'- aCGuCCGACucgagcgCCAUUUCGaUCGCGUCGUg -3'
miRNA:   3'- -GC-GGCUGca-----GGUGGAGC-AGCGCAGCG- -5'
16433 3' -58.8 NC_004084.1 + 30909 0.71 0.343818
Target:  5'- aGCCGugGUCCuCCUggaagaCGUCGa-UCGCu -3'
miRNA:   3'- gCGGCugCAGGuGGA------GCAGCgcAGCG- -5'
16433 3' -58.8 NC_004084.1 + 46549 0.7 0.359836
Target:  5'- -uUCGACGUCCGgaUCGUCGUcgGUCGUg -3'
miRNA:   3'- gcGGCUGCAGGUggAGCAGCG--CAGCG- -5'
16433 3' -58.8 NC_004084.1 + 5689 0.69 0.402111
Target:  5'- uCGUCGAgGUCCGCUggguugaguUCGagGaCGUCGCu -3'
miRNA:   3'- -GCGGCUgCAGGUGG---------AGCagC-GCAGCG- -5'
16433 3' -58.8 NC_004084.1 + 36303 0.69 0.402111
Target:  5'- aGCCGgggauGCGaUUCGCCaauUCGUCuGCGUCGUa -3'
miRNA:   3'- gCGGC-----UGC-AGGUGG---AGCAG-CGCAGCG- -5'
16433 3' -58.8 NC_004084.1 + 17836 0.69 0.428031
Target:  5'- uCGCCGA-GUUCgauggugACCUCGUCGCc-CGCa -3'
miRNA:   3'- -GCGGCUgCAGG-------UGGAGCAGCGcaGCG- -5'
16433 3' -58.8 NC_004084.1 + 4356 0.69 0.428942
Target:  5'- uCGCC--CGUCU-CCUCGUCGCG-CGUc -3'
miRNA:   3'- -GCGGcuGCAGGuGGAGCAGCGCaGCG- -5'
16433 3' -58.8 NC_004084.1 + 673 0.69 0.438118
Target:  5'- uGUgGAUGUCgGCUUCGUCGaCGUCc- -3'
miRNA:   3'- gCGgCUGCAGgUGGAGCAGC-GCAGcg -5'
16433 3' -58.8 NC_004084.1 + 12750 0.69 0.447406
Target:  5'- uCGUCGACGccgaCCGUCUCGUCGuUGUCGg -3'
miRNA:   3'- -GCGGCUGCa---GGUGGAGCAGC-GCAGCg -5'
16433 3' -58.8 NC_004084.1 + 50931 0.68 0.465347
Target:  5'- gGCCGAcuugcuCGUCuCGCCUucgcCGUCGCcgcucgaGUCGCc -3'
miRNA:   3'- gCGGCU------GCAG-GUGGA----GCAGCG-------CAGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.