Results 61 - 80 of 102 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16433 | 3' | -58.8 | NC_004084.1 | + | 16790 | 0.71 | 0.328319 |
Target: 5'- aCGUCGAUGUCCcggaC-CGUCGCcUCGCg -3' miRNA: 3'- -GCGGCUGCAGGug--GaGCAGCGcAGCG- -5' |
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16433 | 3' | -58.8 | NC_004084.1 | + | 46734 | 0.66 | 0.618219 |
Target: 5'- aCGCCguguaGACGUCgCuguCCUCGcCGUagucGUCGCc -3' miRNA: 3'- -GCGG-----CUGCAG-Gu--GGAGCaGCG----CAGCG- -5' |
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16433 | 3' | -58.8 | NC_004084.1 | + | 1100 | 0.66 | 0.618219 |
Target: 5'- cCGCUuuguaGGCGUCCcCCUCGUCGaggagGUCc- -3' miRNA: 3'- -GCGG-----CUGCAGGuGGAGCAGCg----CAGcg -5' |
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16433 | 3' | -58.8 | NC_004084.1 | + | 14087 | 0.66 | 0.607748 |
Target: 5'- aCGuaGACGUCgAUgUCGUCGUGgcgGCa -3' miRNA: 3'- -GCggCUGCAGgUGgAGCAGCGCag-CG- -5' |
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16433 | 3' | -58.8 | NC_004084.1 | + | 45270 | 0.66 | 0.607748 |
Target: 5'- aCGuUCGGuCGUCCGaaUCGUCGcCGUCGa -3' miRNA: 3'- -GC-GGCU-GCAGGUggAGCAGC-GCAGCg -5' |
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16433 | 3' | -58.8 | NC_004084.1 | + | 14155 | 0.66 | 0.597296 |
Target: 5'- uCGCCGuCGUCgugaagGCCggUCGUCcCGUCGUa -3' miRNA: 3'- -GCGGCuGCAGg-----UGG--AGCAGcGCAGCG- -5' |
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16433 | 3' | -58.8 | NC_004084.1 | + | 12858 | 0.66 | 0.597296 |
Target: 5'- cCGUCGGCGuacUCCGCUUCGagGuCcUCGCg -3' miRNA: 3'- -GCGGCUGC---AGGUGGAGCagC-GcAGCG- -5' |
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16433 | 3' | -58.8 | NC_004084.1 | + | 5252 | 0.66 | 0.597296 |
Target: 5'- aCGCUGGgGUCagucaucgGCCUCGUCGaCGaCGUc -3' miRNA: 3'- -GCGGCUgCAGg-------UGGAGCAGC-GCaGCG- -5' |
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16433 | 3' | -58.8 | NC_004084.1 | + | 28724 | 0.66 | 0.597296 |
Target: 5'- aGCCaggacaGCGUCCGCgaC--CGCGUCGCg -3' miRNA: 3'- gCGGc-----UGCAGGUGgaGcaGCGCAGCG- -5' |
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16433 | 3' | -58.8 | NC_004084.1 | + | 15682 | 0.71 | 0.336003 |
Target: 5'- gGCCGAUGUCCuucGCCUgcUCGCGaUCGg -3' miRNA: 3'- gCGGCUGCAGG---UGGAgcAGCGC-AGCg -5' |
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16433 | 3' | -58.8 | NC_004084.1 | + | 28381 | 0.69 | 0.410936 |
Target: 5'- gCGUuuCGACGUgCACCaUCuUCGCGUCGa -3' miRNA: 3'- -GCG--GCUGCAgGUGG-AGcAGCGCAGCg -5' |
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16433 | 3' | -58.8 | NC_004084.1 | + | 26878 | 0.67 | 0.565098 |
Target: 5'- aGCgCGAUGUCCuCCgaggCGaUCGCGgcauccaUCGCg -3' miRNA: 3'- gCG-GCUGCAGGuGGa---GC-AGCGC-------AGCG- -5' |
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16433 | 3' | -58.8 | NC_004084.1 | + | 32417 | 0.66 | 0.57648 |
Target: 5'- cCGUCGACGagcUCGCaCUCGUCGCGa--- -3' miRNA: 3'- -GCGGCUGCa--GGUG-GAGCAGCGCagcg -5' |
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16433 | 3' | -58.8 | NC_004084.1 | + | 27024 | 0.66 | 0.597296 |
Target: 5'- uCGCCGAUaucggcguaGUCCGCCcCGUCGaguUCGa -3' miRNA: 3'- -GCGGCUG---------CAGGUGGaGCAGCgc-AGCg -5' |
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16433 | 3' | -58.8 | NC_004084.1 | + | 17030 | 0.66 | 0.606702 |
Target: 5'- gCGaCCGAgCGUCUgcGCC-CGUCGaugcggugacugaCGUCGCa -3' miRNA: 3'- -GC-GGCU-GCAGG--UGGaGCAGC-------------GCAGCG- -5' |
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16433 | 3' | -58.8 | NC_004084.1 | + | 16962 | 0.72 | 0.291858 |
Target: 5'- uCGCCGGCcaCUgcaagACCUCGaUCGCGUCGg -3' miRNA: 3'- -GCGGCUGcaGG-----UGGAGC-AGCGCAGCg -5' |
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16433 | 3' | -58.8 | NC_004084.1 | + | 5120 | 0.66 | 0.607748 |
Target: 5'- gGCCGAcCGUCgauacaACCUCG--GCGUgGCg -3' miRNA: 3'- gCGGCU-GCAGg-----UGGAGCagCGCAgCG- -5' |
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16433 | 3' | -58.8 | NC_004084.1 | + | 42611 | 0.67 | 0.56613 |
Target: 5'- aGCCGACGUU--CCUCG--GCGUUGUc -3' miRNA: 3'- gCGGCUGCAGguGGAGCagCGCAGCG- -5' |
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16433 | 3' | -58.8 | NC_004084.1 | + | 28160 | 0.69 | 0.438118 |
Target: 5'- gGCUGGaauaGUCCGuCCUCGgccuguUCGaCGUCGCc -3' miRNA: 3'- gCGGCUg---CAGGU-GGAGC------AGC-GCAGCG- -5' |
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16433 | 3' | -58.8 | NC_004084.1 | + | 56931 | 0.69 | 0.410936 |
Target: 5'- gGgCGACGUCUACCaggaggUCGUCGa-UCGCc -3' miRNA: 3'- gCgGCUGCAGGUGG------AGCAGCgcAGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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