miRNA display CGI


Results 81 - 100 of 102 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16433 3' -58.8 NC_004084.1 + 28927 0.76 0.147737
Target:  5'- aG-CGACGUCgGCCUCGggagCGCGUCGa -3'
miRNA:   3'- gCgGCUGCAGgUGGAGCa---GCGCAGCg -5'
16433 3' -58.8 NC_004084.1 + 47360 0.77 0.132929
Target:  5'- uCGUCGGCGgCCGCCccuUCGUcCGCGUCGUc -3'
miRNA:   3'- -GCGGCUGCaGGUGG---AGCA-GCGCAGCG- -5'
16433 3' -58.8 NC_004084.1 + 28381 0.69 0.410936
Target:  5'- gCGUuuCGACGUgCACCaUCuUCGCGUCGa -3'
miRNA:   3'- -GCG--GCUGCAgGUGG-AGcAGCGCAGCg -5'
16433 3' -58.8 NC_004084.1 + 28160 0.69 0.438118
Target:  5'- gGCUGGaauaGUCCGuCCUCGgccuguUCGaCGUCGCc -3'
miRNA:   3'- gCGGCUg---CAGGU-GGAGC------AGC-GCAGCG- -5'
16433 3' -58.8 NC_004084.1 + 3071 0.69 0.447406
Target:  5'- uCGUCGACGggCCG-CUCGUCGaCGUgCGUu -3'
miRNA:   3'- -GCGGCUGCa-GGUgGAGCAGC-GCA-GCG- -5'
16433 3' -58.8 NC_004084.1 + 26222 0.68 0.475903
Target:  5'- aCGaCUGGC-UCCACCaaccgcuguUCGUCGgGUCGUu -3'
miRNA:   3'- -GC-GGCUGcAGGUGG---------AGCAGCgCAGCG- -5'
16433 3' -58.8 NC_004084.1 + 53168 0.66 0.607748
Target:  5'- gGCCGAUGaCUgACCccagcguguUCGUC-CGUCGCg -3'
miRNA:   3'- gCGGCUGCaGG-UGG---------AGCAGcGCAGCG- -5'
16433 3' -58.8 NC_004084.1 + 5120 0.66 0.607748
Target:  5'- gGCCGAcCGUCgauacaACCUCG--GCGUgGCg -3'
miRNA:   3'- gCGGCU-GCAGg-----UGGAGCagCGCAgCG- -5'
16433 3' -58.8 NC_004084.1 + 17030 0.66 0.606702
Target:  5'- gCGaCCGAgCGUCUgcGCC-CGUCGaugcggugacugaCGUCGCa -3'
miRNA:   3'- -GC-GGCU-GCAGG--UGGaGCAGC-------------GCAGCG- -5'
16433 3' -58.8 NC_004084.1 + 27024 0.66 0.597296
Target:  5'- uCGCCGAUaucggcguaGUCCGCCcCGUCGaguUCGa -3'
miRNA:   3'- -GCGGCUG---------CAGGUGGaGCAGCgc-AGCg -5'
16433 3' -58.8 NC_004084.1 + 32417 0.66 0.57648
Target:  5'- cCGUCGACGagcUCGCaCUCGUCGCGa--- -3'
miRNA:   3'- -GCGGCUGCa--GGUG-GAGCAGCGCagcg -5'
16433 3' -58.8 NC_004084.1 + 42611 0.67 0.56613
Target:  5'- aGCCGACGUU--CCUCG--GCGUUGUc -3'
miRNA:   3'- gCGGCUGCAGguGGAGCagCGCAGCG- -5'
16433 3' -58.8 NC_004084.1 + 26878 0.67 0.565098
Target:  5'- aGCgCGAUGUCCuCCgaggCGaUCGCGgcauccaUCGCg -3'
miRNA:   3'- gCG-GCUGCAGGuGGa---GC-AGCGC-------AGCG- -5'
16433 3' -58.8 NC_004084.1 + 29064 0.67 0.545584
Target:  5'- gGCCG-CGaCCGCCcgcUCGggggCGuCGUCGCc -3'
miRNA:   3'- gCGGCuGCaGGUGG---AGCa---GC-GCAGCG- -5'
16433 3' -58.8 NC_004084.1 + 21801 0.67 0.545584
Target:  5'- aGCCGAUG--CACCUcaaCGUCaGCGUCGa -3'
miRNA:   3'- gCGGCUGCagGUGGA---GCAG-CGCAGCg -5'
16433 3' -58.8 NC_004084.1 + 30767 0.67 0.545584
Target:  5'- aGUCGAgCGaCCuCCUCGagGCGUaCGCg -3'
miRNA:   3'- gCGGCU-GCaGGuGGAGCagCGCA-GCG- -5'
16433 3' -58.8 NC_004084.1 + 49824 0.67 0.534385
Target:  5'- aGCCucGACGagUUCAUcgaaucaCUCGUCGaCGUCGCg -3'
miRNA:   3'- gCGG--CUGC--AGGUG-------GAGCAGC-GCAGCG- -5'
16433 3' -58.8 NC_004084.1 + 29699 0.67 0.525284
Target:  5'- uCGCgGACGcugUCCugGCUgaGUCGCGUCGUc -3'
miRNA:   3'- -GCGgCUGC---AGG--UGGagCAGCGCAGCG- -5'
16433 3' -58.8 NC_004084.1 + 9071 0.68 0.485603
Target:  5'- aCGUCGACGaUCACCUCGaCaCGaUCGCc -3'
miRNA:   3'- -GCGGCUGCaGGUGGAGCaGcGC-AGCG- -5'
16433 3' -58.8 NC_004084.1 + 9383 0.68 0.475903
Target:  5'- uGCCGuccCGUCCcguCCaggaCGUCGUGUCGg -3'
miRNA:   3'- gCGGCu--GCAGGu--GGa---GCAGCGCAGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.