Results 1 - 20 of 40 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16433 | 5' | -53.1 | NC_004084.1 | + | 55956 | 0.66 | 0.865253 |
Target: 5'- cUCGCGAuccagcGUG-GCUcGGAUCuCGUCGa -3' miRNA: 3'- -AGCGCUu-----CACgCGGuUCUAGuGCAGC- -5' |
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16433 | 5' | -53.1 | NC_004084.1 | + | 57411 | 0.66 | 0.865253 |
Target: 5'- cCGCGAucaGGUaCGCCAGcguGAUCGuCGUCu -3' miRNA: 3'- aGCGCU---UCAcGCGGUU---CUAGU-GCAGc -5' |
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16433 | 5' | -53.1 | NC_004084.1 | + | 31413 | 0.66 | 0.857007 |
Target: 5'- -gGCGAAGUcgcagacgacGCgGCCGcgauGGAUCugGUCu -3' miRNA: 3'- agCGCUUCA----------CG-CGGU----UCUAGugCAGc -5' |
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16433 | 5' | -53.1 | NC_004084.1 | + | 49825 | 0.66 | 0.857007 |
Target: 5'- gCGCauGAAGUaccggGCGUgGAGGUCGCGcUCGc -3' miRNA: 3'- aGCG--CUUCA-----CGCGgUUCUAGUGC-AGC- -5' |
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16433 | 5' | -53.1 | NC_004084.1 | + | 5134 | 0.66 | 0.857007 |
Target: 5'- cUCGCGGcuGGU-CGCCAGGA---CGUCGc -3' miRNA: 3'- -AGCGCU--UCAcGCGGUUCUaguGCAGC- -5' |
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16433 | 5' | -53.1 | NC_004084.1 | + | 45567 | 0.66 | 0.857007 |
Target: 5'- -aGCGGAGUaCGCCGacGGGuUCGCGUUc -3' miRNA: 3'- agCGCUUCAcGCGGU--UCU-AGUGCAGc -5' |
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16433 | 5' | -53.1 | NC_004084.1 | + | 44282 | 0.66 | 0.85617 |
Target: 5'- -gGCGAGGUGUcgguaugaacgacGCUGAGAcgCAgGUCGg -3' miRNA: 3'- agCGCUUCACG-------------CGGUUCUa-GUgCAGC- -5' |
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16433 | 5' | -53.1 | NC_004084.1 | + | 8030 | 0.66 | 0.839812 |
Target: 5'- cUGCGAAGUgaGCGuCCGAGAacugCGCGgCGu -3' miRNA: 3'- aGCGCUUCA--CGC-GGUUCUa---GUGCaGC- -5' |
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16433 | 5' | -53.1 | NC_004084.1 | + | 12411 | 0.66 | 0.839812 |
Target: 5'- -aGCGGAucGUGaccgucuucuCGCCGuccauGAUCGCGUCGa -3' miRNA: 3'- agCGCUU--CAC----------GCGGUu----CUAGUGCAGC- -5' |
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16433 | 5' | -53.1 | NC_004084.1 | + | 43808 | 0.66 | 0.830878 |
Target: 5'- -gGCGAGGaGCGCCGggagauGGAUCAuuCGUgGg -3' miRNA: 3'- agCGCUUCaCGCGGU------UCUAGU--GCAgC- -5' |
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16433 | 5' | -53.1 | NC_004084.1 | + | 32097 | 0.67 | 0.812388 |
Target: 5'- cUGCGAuuuccAGUGCGUacacguacgaCAcGAUCugGUCGa -3' miRNA: 3'- aGCGCU-----UCACGCG----------GUuCUAGugCAGC- -5' |
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16433 | 5' | -53.1 | NC_004084.1 | + | 6142 | 0.67 | 0.802851 |
Target: 5'- cCGCGAccaGCGCCGGGGUUccugGCGaUCGg -3' miRNA: 3'- aGCGCUucaCGCGGUUCUAG----UGC-AGC- -5' |
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16433 | 5' | -53.1 | NC_004084.1 | + | 28832 | 0.67 | 0.802851 |
Target: 5'- aUCGCGAccGGUuCGCCGucucGGUCACGaaccUCGa -3' miRNA: 3'- -AGCGCU--UCAcGCGGUu---CUAGUGC----AGC- -5' |
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16433 | 5' | -53.1 | NC_004084.1 | + | 44605 | 0.67 | 0.793133 |
Target: 5'- aUCGCcGAGUGgGCC--GAUCGCcUCGg -3' miRNA: 3'- -AGCGcUUCACgCGGuuCUAGUGcAGC- -5' |
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16433 | 5' | -53.1 | NC_004084.1 | + | 8791 | 0.67 | 0.783246 |
Target: 5'- cUCGaCGGAGcccgGCGaCGAGAUCucCGUCGa -3' miRNA: 3'- -AGC-GCUUCa---CGCgGUUCUAGu-GCAGC- -5' |
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16433 | 5' | -53.1 | NC_004084.1 | + | 1042 | 0.68 | 0.752677 |
Target: 5'- gCGCGcucGAGUuCGCCGAGGUCGaacagccacuCGUCGc -3' miRNA: 3'- aGCGC---UUCAcGCGGUUCUAGU----------GCAGC- -5' |
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16433 | 5' | -53.1 | NC_004084.1 | + | 56117 | 0.69 | 0.710236 |
Target: 5'- gUCGaCGucGUGCGCCGcaGUguCGUCGg -3' miRNA: 3'- -AGC-GCuuCACGCGGUucUAguGCAGC- -5' |
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16433 | 5' | -53.1 | NC_004084.1 | + | 35437 | 0.69 | 0.699403 |
Target: 5'- cUCGCGAGGU-CGaCCAGGAcUCG-GUCGg -3' miRNA: 3'- -AGCGCUUCAcGC-GGUUCU-AGUgCAGC- -5' |
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16433 | 5' | -53.1 | NC_004084.1 | + | 20985 | 0.69 | 0.688504 |
Target: 5'- uUCGCG-AGUGcCGCCGcuaucgAGAUCcaaGCGUCc -3' miRNA: 3'- -AGCGCuUCAC-GCGGU------UCUAG---UGCAGc -5' |
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16433 | 5' | -53.1 | NC_004084.1 | + | 26290 | 0.69 | 0.67755 |
Target: 5'- cUCGCGAGGUcUGUCGaccAGAUCGUGUCGu -3' miRNA: 3'- -AGCGCUUCAcGCGGU---UCUAGUGCAGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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