Results 21 - 40 of 40 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16433 | 5' | -53.1 | NC_004084.1 | + | 26290 | 0.69 | 0.67755 |
Target: 5'- cUCGCGAGGUcUGUCGaccAGAUCGUGUCGu -3' miRNA: 3'- -AGCGCUUCAcGCGGU---UCUAGUGCAGC- -5' |
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16433 | 5' | -53.1 | NC_004084.1 | + | 10255 | 0.69 | 0.666553 |
Target: 5'- gUCGCGGucgGCGUCcGGAUCACGauguUCGa -3' miRNA: 3'- -AGCGCUucaCGCGGuUCUAGUGC----AGC- -5' |
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16433 | 5' | -53.1 | NC_004084.1 | + | 14901 | 0.7 | 0.659938 |
Target: 5'- gCGCGAugaagacgugcuccgGGUuCGCCucGAUCugGUCGa -3' miRNA: 3'- aGCGCU---------------UCAcGCGGuuCUAGugCAGC- -5' |
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16433 | 5' | -53.1 | NC_004084.1 | + | 28906 | 0.7 | 0.655523 |
Target: 5'- -gGCGAagcgGGUGUGcCCGAGAgcgACGUCGg -3' miRNA: 3'- agCGCU----UCACGC-GGUUCUag-UGCAGC- -5' |
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16433 | 5' | -53.1 | NC_004084.1 | + | 8739 | 0.7 | 0.644471 |
Target: 5'- cUCGUGGAuGU-CGCCGguccauucggAGAUCAUGUCGa -3' miRNA: 3'- -AGCGCUU-CAcGCGGU----------UCUAGUGCAGC- -5' |
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16433 | 5' | -53.1 | NC_004084.1 | + | 46173 | 0.7 | 0.633407 |
Target: 5'- cCGCGAacuugcccagcuGGUagGCGgCGAGAUCGuCGUCGg -3' miRNA: 3'- aGCGCU------------UCA--CGCgGUUCUAGU-GCAGC- -5' |
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16433 | 5' | -53.1 | NC_004084.1 | + | 52970 | 0.7 | 0.633407 |
Target: 5'- gUCGCG-AGUGCGCUGGucgccGAUCGCGaUCc -3' miRNA: 3'- -AGCGCuUCACGCGGUU-----CUAGUGC-AGc -5' |
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16433 | 5' | -53.1 | NC_004084.1 | + | 42769 | 0.7 | 0.633407 |
Target: 5'- gUCGgGAAGgaGUGCUggGAUCACGgugaCGa -3' miRNA: 3'- -AGCgCUUCa-CGCGGuuCUAGUGCa---GC- -5' |
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16433 | 5' | -53.1 | NC_004084.1 | + | 44049 | 0.7 | 0.633407 |
Target: 5'- gUGgGAGGUGCGCgAAGAUgcCGCGUa- -3' miRNA: 3'- aGCgCUUCACGCGgUUCUA--GUGCAgc -5' |
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16433 | 5' | -53.1 | NC_004084.1 | + | 28104 | 0.7 | 0.633407 |
Target: 5'- aCGguuCGggGUGCGCCucGAcgagCGCGUCa -3' miRNA: 3'- aGC---GCuuCACGCGGuuCUa---GUGCAGc -5' |
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16433 | 5' | -53.1 | NC_004084.1 | + | 56498 | 0.7 | 0.622343 |
Target: 5'- aUGCGgcGUGUcgugaaGCCAGGcgGUCACGUCu -3' miRNA: 3'- aGCGCuuCACG------CGGUUC--UAGUGCAGc -5' |
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16433 | 5' | -53.1 | NC_004084.1 | + | 50505 | 0.7 | 0.621237 |
Target: 5'- cCGCGucuucuucGCGCCGacugucucgguucGGAUCGCGUCGa -3' miRNA: 3'- aGCGCuuca----CGCGGU-------------UCUAGUGCAGC- -5' |
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16433 | 5' | -53.1 | NC_004084.1 | + | 36253 | 0.71 | 0.58924 |
Target: 5'- gUCGaCGuccucGAGUGCGCCGAGGcgcUCGCGgUCa -3' miRNA: 3'- -AGC-GC-----UUCACGCGGUUCU---AGUGC-AGc -5' |
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16433 | 5' | -53.1 | NC_004084.1 | + | 13757 | 0.71 | 0.578267 |
Target: 5'- cUCGCccucGAGGUcGCGCUgggcgggcucgGAGAUCGCGUCc -3' miRNA: 3'- -AGCG----CUUCA-CGCGG-----------UUCUAGUGCAGc -5' |
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16433 | 5' | -53.1 | NC_004084.1 | + | 57383 | 0.72 | 0.534903 |
Target: 5'- -gGCGAacucgAGcGCGCCcccGAUCGCGUCGa -3' miRNA: 3'- agCGCU-----UCaCGCGGuu-CUAGUGCAGC- -5' |
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16433 | 5' | -53.1 | NC_004084.1 | + | 31412 | 0.72 | 0.513644 |
Target: 5'- gUCGUaGAGGaGCGUgAGGAUCGCGUUGu -3' miRNA: 3'- -AGCG-CUUCaCGCGgUUCUAGUGCAGC- -5' |
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16433 | 5' | -53.1 | NC_004084.1 | + | 51508 | 0.72 | 0.507333 |
Target: 5'- gUCuCGAAGUcuacguccgacucgaGCGCCAuuucGAUCGCGUCGu -3' miRNA: 3'- -AGcGCUUCA---------------CGCGGUu---CUAGUGCAGC- -5' |
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16433 | 5' | -53.1 | NC_004084.1 | + | 51326 | 0.77 | 0.288098 |
Target: 5'- -gGCGAucgAGUGCGCCcgcGAGAUCuuCGUCGa -3' miRNA: 3'- agCGCU---UCACGCGG---UUCUAGu-GCAGC- -5' |
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16433 | 5' | -53.1 | NC_004084.1 | + | 36138 | 0.79 | 0.216581 |
Target: 5'- aCGCGAGGUGCguuGCCucgacuGGAUCgACGUCGa -3' miRNA: 3'- aGCGCUUCACG---CGGu-----UCUAG-UGCAGC- -5' |
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16433 | 5' | -53.1 | NC_004084.1 | + | 35373 | 1.1 | 0.001558 |
Target: 5'- aUCGCGAAGUGCGCCAAGAUCACGUCGa -3' miRNA: 3'- -AGCGCUUCACGCGGUUCUAGUGCAGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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