miRNA display CGI


Results 1 - 20 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16433 5' -53.1 NC_004084.1 + 35373 1.1 0.001558
Target:  5'- aUCGCGAAGUGCGCCAAGAUCACGUCGa -3'
miRNA:   3'- -AGCGCUUCACGCGGUUCUAGUGCAGC- -5'
16433 5' -53.1 NC_004084.1 + 45567 0.66 0.857007
Target:  5'- -aGCGGAGUaCGCCGacGGGuUCGCGUUc -3'
miRNA:   3'- agCGCUUCAcGCGGU--UCU-AGUGCAGc -5'
16433 5' -53.1 NC_004084.1 + 44282 0.66 0.85617
Target:  5'- -gGCGAGGUGUcgguaugaacgacGCUGAGAcgCAgGUCGg -3'
miRNA:   3'- agCGCUUCACG-------------CGGUUCUa-GUgCAGC- -5'
16433 5' -53.1 NC_004084.1 + 43808 0.66 0.830878
Target:  5'- -gGCGAGGaGCGCCGggagauGGAUCAuuCGUgGg -3'
miRNA:   3'- agCGCUUCaCGCGGU------UCUAGU--GCAgC- -5'
16433 5' -53.1 NC_004084.1 + 28832 0.67 0.802851
Target:  5'- aUCGCGAccGGUuCGCCGucucGGUCACGaaccUCGa -3'
miRNA:   3'- -AGCGCU--UCAcGCGGUu---CUAGUGC----AGC- -5'
16433 5' -53.1 NC_004084.1 + 44605 0.67 0.793133
Target:  5'- aUCGCcGAGUGgGCC--GAUCGCcUCGg -3'
miRNA:   3'- -AGCGcUUCACgCGGuuCUAGUGcAGC- -5'
16433 5' -53.1 NC_004084.1 + 8791 0.67 0.783246
Target:  5'- cUCGaCGGAGcccgGCGaCGAGAUCucCGUCGa -3'
miRNA:   3'- -AGC-GCUUCa---CGCgGUUCUAGu-GCAGC- -5'
16433 5' -53.1 NC_004084.1 + 26290 0.69 0.67755
Target:  5'- cUCGCGAGGUcUGUCGaccAGAUCGUGUCGu -3'
miRNA:   3'- -AGCGCUUCAcGCGGU---UCUAGUGCAGC- -5'
16433 5' -53.1 NC_004084.1 + 28906 0.7 0.655523
Target:  5'- -gGCGAagcgGGUGUGcCCGAGAgcgACGUCGg -3'
miRNA:   3'- agCGCU----UCACGC-GGUUCUag-UGCAGC- -5'
16433 5' -53.1 NC_004084.1 + 44049 0.7 0.633407
Target:  5'- gUGgGAGGUGCGCgAAGAUgcCGCGUa- -3'
miRNA:   3'- aGCgCUUCACGCGgUUCUA--GUGCAgc -5'
16433 5' -53.1 NC_004084.1 + 51326 0.77 0.288098
Target:  5'- -gGCGAucgAGUGCGCCcgcGAGAUCuuCGUCGa -3'
miRNA:   3'- agCGCU---UCACGCGG---UUCUAGu-GCAGC- -5'
16433 5' -53.1 NC_004084.1 + 31412 0.72 0.513644
Target:  5'- gUCGUaGAGGaGCGUgAGGAUCGCGUUGu -3'
miRNA:   3'- -AGCG-CUUCaCGCGgUUCUAGUGCAGC- -5'
16433 5' -53.1 NC_004084.1 + 57383 0.72 0.534903
Target:  5'- -gGCGAacucgAGcGCGCCcccGAUCGCGUCGa -3'
miRNA:   3'- agCGCU-----UCaCGCGGuu-CUAGUGCAGC- -5'
16433 5' -53.1 NC_004084.1 + 56498 0.7 0.622343
Target:  5'- aUGCGgcGUGUcgugaaGCCAGGcgGUCACGUCu -3'
miRNA:   3'- aGCGCuuCACG------CGGUUC--UAGUGCAGc -5'
16433 5' -53.1 NC_004084.1 + 28104 0.7 0.633407
Target:  5'- aCGguuCGggGUGCGCCucGAcgagCGCGUCa -3'
miRNA:   3'- aGC---GCuuCACGCGGuuCUa---GUGCAGc -5'
16433 5' -53.1 NC_004084.1 + 42769 0.7 0.633407
Target:  5'- gUCGgGAAGgaGUGCUggGAUCACGgugaCGa -3'
miRNA:   3'- -AGCgCUUCa-CGCGGuuCUAGUGCa---GC- -5'
16433 5' -53.1 NC_004084.1 + 36138 0.79 0.216581
Target:  5'- aCGCGAGGUGCguuGCCucgacuGGAUCgACGUCGa -3'
miRNA:   3'- aGCGCUUCACG---CGGu-----UCUAG-UGCAGC- -5'
16433 5' -53.1 NC_004084.1 + 55956 0.66 0.865253
Target:  5'- cUCGCGAuccagcGUG-GCUcGGAUCuCGUCGa -3'
miRNA:   3'- -AGCGCUu-----CACgCGGuUCUAGuGCAGC- -5'
16433 5' -53.1 NC_004084.1 + 5134 0.66 0.857007
Target:  5'- cUCGCGGcuGGU-CGCCAGGA---CGUCGc -3'
miRNA:   3'- -AGCGCU--UCAcGCGGUUCUaguGCAGC- -5'
16433 5' -53.1 NC_004084.1 + 49825 0.66 0.857007
Target:  5'- gCGCauGAAGUaccggGCGUgGAGGUCGCGcUCGc -3'
miRNA:   3'- aGCG--CUUCA-----CGCGgUUCUAGUGC-AGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.