miRNA display CGI


Results 1 - 20 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16433 5' -53.1 NC_004084.1 + 8030 0.66 0.839812
Target:  5'- cUGCGAAGUgaGCGuCCGAGAacugCGCGgCGu -3'
miRNA:   3'- aGCGCUUCA--CGC-GGUUCUa---GUGCaGC- -5'
16433 5' -53.1 NC_004084.1 + 46173 0.7 0.633407
Target:  5'- cCGCGAacuugcccagcuGGUagGCGgCGAGAUCGuCGUCGg -3'
miRNA:   3'- aGCGCU------------UCA--CGCgGUUCUAGU-GCAGC- -5'
16433 5' -53.1 NC_004084.1 + 50505 0.7 0.621237
Target:  5'- cCGCGucuucuucGCGCCGacugucucgguucGGAUCGCGUCGa -3'
miRNA:   3'- aGCGCuuca----CGCGGU-------------UCUAGUGCAGC- -5'
16433 5' -53.1 NC_004084.1 + 36138 0.79 0.216581
Target:  5'- aCGCGAGGUGCguuGCCucgacuGGAUCgACGUCGa -3'
miRNA:   3'- aGCGCUUCACG---CGGu-----UCUAG-UGCAGC- -5'
16433 5' -53.1 NC_004084.1 + 1042 0.68 0.752677
Target:  5'- gCGCGcucGAGUuCGCCGAGGUCGaacagccacuCGUCGc -3'
miRNA:   3'- aGCGC---UUCAcGCGGUUCUAGU----------GCAGC- -5'
16433 5' -53.1 NC_004084.1 + 57411 0.66 0.865253
Target:  5'- cCGCGAucaGGUaCGCCAGcguGAUCGuCGUCu -3'
miRNA:   3'- aGCGCU---UCAcGCGGUU---CUAGU-GCAGc -5'
16433 5' -53.1 NC_004084.1 + 55956 0.66 0.865253
Target:  5'- cUCGCGAuccagcGUG-GCUcGGAUCuCGUCGa -3'
miRNA:   3'- -AGCGCUu-----CACgCGGuUCUAGuGCAGC- -5'
16433 5' -53.1 NC_004084.1 + 5134 0.66 0.857007
Target:  5'- cUCGCGGcuGGU-CGCCAGGA---CGUCGc -3'
miRNA:   3'- -AGCGCU--UCAcGCGGUUCUaguGCAGC- -5'
16433 5' -53.1 NC_004084.1 + 49825 0.66 0.857007
Target:  5'- gCGCauGAAGUaccggGCGUgGAGGUCGCGcUCGc -3'
miRNA:   3'- aGCG--CUUCA-----CGCGgUUCUAGUGC-AGC- -5'
16433 5' -53.1 NC_004084.1 + 8739 0.7 0.644471
Target:  5'- cUCGUGGAuGU-CGCCGguccauucggAGAUCAUGUCGa -3'
miRNA:   3'- -AGCGCUU-CAcGCGGU----------UCUAGUGCAGC- -5'
16433 5' -53.1 NC_004084.1 + 57020 0.69 0.67755
Target:  5'- gUGCGaAAGUGCGUguAGAUguCGUCc -3'
miRNA:   3'- aGCGC-UUCACGCGguUCUAguGCAGc -5'
16433 5' -53.1 NC_004084.1 + 20985 0.69 0.688504
Target:  5'- uUCGCG-AGUGcCGCCGcuaucgAGAUCcaaGCGUCc -3'
miRNA:   3'- -AGCGCuUCAC-GCGGU------UCUAG---UGCAGc -5'
16433 5' -53.1 NC_004084.1 + 12411 0.66 0.839812
Target:  5'- -aGCGGAucGUGaccgucuucuCGCCGuccauGAUCGCGUCGa -3'
miRNA:   3'- agCGCUU--CAC----------GCGGUu----CUAGUGCAGC- -5'
16433 5' -53.1 NC_004084.1 + 10255 0.69 0.666553
Target:  5'- gUCGCGGucgGCGUCcGGAUCACGauguUCGa -3'
miRNA:   3'- -AGCGCUucaCGCGGuUCUAGUGC----AGC- -5'
16433 5' -53.1 NC_004084.1 + 32097 0.67 0.812388
Target:  5'- cUGCGAuuuccAGUGCGUacacguacgaCAcGAUCugGUCGa -3'
miRNA:   3'- aGCGCU-----UCACGCG----------GUuCUAGugCAGC- -5'
16433 5' -53.1 NC_004084.1 + 35437 0.69 0.699403
Target:  5'- cUCGCGAGGU-CGaCCAGGAcUCG-GUCGg -3'
miRNA:   3'- -AGCGCUUCAcGC-GGUUCU-AGUgCAGC- -5'
16433 5' -53.1 NC_004084.1 + 14901 0.7 0.659938
Target:  5'- gCGCGAugaagacgugcuccgGGUuCGCCucGAUCugGUCGa -3'
miRNA:   3'- aGCGCU---------------UCAcGCGGuuCUAGugCAGC- -5'
16433 5' -53.1 NC_004084.1 + 52970 0.7 0.633407
Target:  5'- gUCGCG-AGUGCGCUGGucgccGAUCGCGaUCc -3'
miRNA:   3'- -AGCGCuUCACGCGGUU-----CUAGUGC-AGc -5'
16433 5' -53.1 NC_004084.1 + 6142 0.67 0.802851
Target:  5'- cCGCGAccaGCGCCGGGGUUccugGCGaUCGg -3'
miRNA:   3'- aGCGCUucaCGCGGUUCUAG----UGC-AGC- -5'
16433 5' -53.1 NC_004084.1 + 56117 0.69 0.710236
Target:  5'- gUCGaCGucGUGCGCCGcaGUguCGUCGg -3'
miRNA:   3'- -AGC-GCuuCACGCGGUucUAguGCAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.