miRNA display CGI


Results 1 - 18 of 18 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16434 5' -52.1 NC_004084.1 + 8199 0.66 0.915761
Target:  5'- ---gGGUUCGCGgAugGCGucGAGGUUGa -3'
miRNA:   3'- guugCCAGGUGCaUugCGC--UUCCAGC- -5'
16434 5' -52.1 NC_004084.1 + 1187 0.66 0.915761
Target:  5'- -cGCGGUCguggACGUAGuCGCGuaagcGGUCGa -3'
miRNA:   3'- guUGCCAGg---UGCAUU-GCGCuu---CCAGC- -5'
16434 5' -52.1 NC_004084.1 + 44966 0.66 0.915761
Target:  5'- --cUGGUCCGCGguuCGC--AGGUCa -3'
miRNA:   3'- guuGCCAGGUGCauuGCGcuUCCAGc -5'
16434 5' -52.1 NC_004084.1 + 22500 0.66 0.909353
Target:  5'- gGACGuaGUCCACGUcGACGCGGccacuccagcGGGaCGu -3'
miRNA:   3'- gUUGC--CAGGUGCA-UUGCGCU----------UCCaGC- -5'
16434 5' -52.1 NC_004084.1 + 29306 0.66 0.90267
Target:  5'- uGugGGUacgcuaCCugGaUGGCGCGGAGGaCGu -3'
miRNA:   3'- gUugCCA------GGugC-AUUGCGCUUCCaGC- -5'
16434 5' -52.1 NC_004084.1 + 928 0.66 0.901987
Target:  5'- -uGCGGccUgCugGUGACGCucccggaGGAGGUCGc -3'
miRNA:   3'- guUGCC--AgGugCAUUGCG-------CUUCCAGC- -5'
16434 5' -52.1 NC_004084.1 + 41066 0.66 0.895714
Target:  5'- aAGCGGUCCGCGaguACGuCGAcgagacgaugcGGGcCGu -3'
miRNA:   3'- gUUGCCAGGUGCau-UGC-GCU-----------UCCaGC- -5'
16434 5' -52.1 NC_004084.1 + 25366 0.66 0.895714
Target:  5'- aAACGGaUCgACGUGAgCGCcGAgucagucgAGGUCGa -3'
miRNA:   3'- gUUGCC-AGgUGCAUU-GCG-CU--------UCCAGC- -5'
16434 5' -52.1 NC_004084.1 + 29147 0.66 0.881
Target:  5'- uCGGCGGUgCugGUGugguCGCGcGGGcCGu -3'
miRNA:   3'- -GUUGCCAgGugCAUu---GCGCuUCCaGC- -5'
16434 5' -52.1 NC_004084.1 + 50464 0.66 0.881
Target:  5'- -uGCGGUCgGCGguguCGUucgccgauguuGAGGGUCGg -3'
miRNA:   3'- guUGCCAGgUGCauu-GCG-----------CUUCCAGC- -5'
16434 5' -52.1 NC_004084.1 + 23521 0.67 0.865253
Target:  5'- uCAGCGaGUCCAuCGUcGCGaUGGAGGcCGu -3'
miRNA:   3'- -GUUGC-CAGGU-GCAuUGC-GCUUCCaGC- -5'
16434 5' -52.1 NC_004084.1 + 39353 0.69 0.763006
Target:  5'- aGACGG-CCGCGcccuuACGgaucCGAGGGUCGa -3'
miRNA:   3'- gUUGCCaGGUGCau---UGC----GCUUCCAGC- -5'
16434 5' -52.1 NC_004084.1 + 6600 0.69 0.742224
Target:  5'- gCGACaGUCgGCG-GGCGCGGAGGUa- -3'
miRNA:   3'- -GUUGcCAGgUGCaUUGCGCUUCCAgc -5'
16434 5' -52.1 NC_004084.1 + 40827 0.7 0.720992
Target:  5'- uCGAC-GUCCACGUu-C-CGGAGGUCGa -3'
miRNA:   3'- -GUUGcCAGGUGCAuuGcGCUUCCAGC- -5'
16434 5' -52.1 NC_004084.1 + 17114 0.7 0.688504
Target:  5'- --cCGGUCCGCuccagGACGuCGAugAGGUCGg -3'
miRNA:   3'- guuGCCAGGUGca---UUGC-GCU--UCCAGC- -5'
16434 5' -52.1 NC_004084.1 + 57246 0.72 0.611287
Target:  5'- aCGAcCGcGUCgGCGaUGACGCGAAGGUgGu -3'
miRNA:   3'- -GUU-GC-CAGgUGC-AUUGCGCUUCCAgC- -5'
16434 5' -52.1 NC_004084.1 + 50629 0.74 0.482434
Target:  5'- uCGACGGUCagaGCGUucuuuucaguGAUGCGAcucAGGUCGu -3'
miRNA:   3'- -GUUGCCAGg--UGCA----------UUGCGCU---UCCAGC- -5'
16434 5' -52.1 NC_004084.1 + 35661 1.09 0.00252
Target:  5'- gCAACGGUCCACGUAACGCGAAGGUCGa -3'
miRNA:   3'- -GUUGCCAGGUGCAUUGCGCUUCCAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.