Results 1 - 18 of 18 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16434 | 5' | -52.1 | NC_004084.1 | + | 8199 | 0.66 | 0.915761 |
Target: 5'- ---gGGUUCGCGgAugGCGucGAGGUUGa -3' miRNA: 3'- guugCCAGGUGCaUugCGC--UUCCAGC- -5' |
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16434 | 5' | -52.1 | NC_004084.1 | + | 50464 | 0.66 | 0.881 |
Target: 5'- -uGCGGUCgGCGguguCGUucgccgauguuGAGGGUCGg -3' miRNA: 3'- guUGCCAGgUGCauu-GCG-----------CUUCCAGC- -5' |
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16434 | 5' | -52.1 | NC_004084.1 | + | 25366 | 0.66 | 0.895714 |
Target: 5'- aAACGGaUCgACGUGAgCGCcGAgucagucgAGGUCGa -3' miRNA: 3'- gUUGCC-AGgUGCAUU-GCG-CU--------UCCAGC- -5' |
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16434 | 5' | -52.1 | NC_004084.1 | + | 928 | 0.66 | 0.901987 |
Target: 5'- -uGCGGccUgCugGUGACGCucccggaGGAGGUCGc -3' miRNA: 3'- guUGCC--AgGugCAUUGCG-------CUUCCAGC- -5' |
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16434 | 5' | -52.1 | NC_004084.1 | + | 22500 | 0.66 | 0.909353 |
Target: 5'- gGACGuaGUCCACGUcGACGCGGccacuccagcGGGaCGu -3' miRNA: 3'- gUUGC--CAGGUGCA-UUGCGCU----------UCCaGC- -5' |
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16434 | 5' | -52.1 | NC_004084.1 | + | 1187 | 0.66 | 0.915761 |
Target: 5'- -cGCGGUCguggACGUAGuCGCGuaagcGGUCGa -3' miRNA: 3'- guUGCCAGg---UGCAUU-GCGCuu---CCAGC- -5' |
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16434 | 5' | -52.1 | NC_004084.1 | + | 44966 | 0.66 | 0.915761 |
Target: 5'- --cUGGUCCGCGguuCGC--AGGUCa -3' miRNA: 3'- guuGCCAGGUGCauuGCGcuUCCAGc -5' |
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16434 | 5' | -52.1 | NC_004084.1 | + | 29306 | 0.66 | 0.90267 |
Target: 5'- uGugGGUacgcuaCCugGaUGGCGCGGAGGaCGu -3' miRNA: 3'- gUugCCA------GGugC-AUUGCGCUUCCaGC- -5' |
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16434 | 5' | -52.1 | NC_004084.1 | + | 41066 | 0.66 | 0.895714 |
Target: 5'- aAGCGGUCCGCGaguACGuCGAcgagacgaugcGGGcCGu -3' miRNA: 3'- gUUGCCAGGUGCau-UGC-GCU-----------UCCaGC- -5' |
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16434 | 5' | -52.1 | NC_004084.1 | + | 29147 | 0.66 | 0.881 |
Target: 5'- uCGGCGGUgCugGUGugguCGCGcGGGcCGu -3' miRNA: 3'- -GUUGCCAgGugCAUu---GCGCuUCCaGC- -5' |
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16434 | 5' | -52.1 | NC_004084.1 | + | 23521 | 0.67 | 0.865253 |
Target: 5'- uCAGCGaGUCCAuCGUcGCGaUGGAGGcCGu -3' miRNA: 3'- -GUUGC-CAGGU-GCAuUGC-GCUUCCaGC- -5' |
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16434 | 5' | -52.1 | NC_004084.1 | + | 6600 | 0.69 | 0.742224 |
Target: 5'- gCGACaGUCgGCG-GGCGCGGAGGUa- -3' miRNA: 3'- -GUUGcCAGgUGCaUUGCGCUUCCAgc -5' |
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16434 | 5' | -52.1 | NC_004084.1 | + | 39353 | 0.69 | 0.763006 |
Target: 5'- aGACGG-CCGCGcccuuACGgaucCGAGGGUCGa -3' miRNA: 3'- gUUGCCaGGUGCau---UGC----GCUUCCAGC- -5' |
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16434 | 5' | -52.1 | NC_004084.1 | + | 40827 | 0.7 | 0.720992 |
Target: 5'- uCGAC-GUCCACGUu-C-CGGAGGUCGa -3' miRNA: 3'- -GUUGcCAGGUGCAuuGcGCUUCCAGC- -5' |
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16434 | 5' | -52.1 | NC_004084.1 | + | 17114 | 0.7 | 0.688504 |
Target: 5'- --cCGGUCCGCuccagGACGuCGAugAGGUCGg -3' miRNA: 3'- guuGCCAGGUGca---UUGC-GCU--UCCAGC- -5' |
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16434 | 5' | -52.1 | NC_004084.1 | + | 57246 | 0.72 | 0.611287 |
Target: 5'- aCGAcCGcGUCgGCGaUGACGCGAAGGUgGu -3' miRNA: 3'- -GUU-GC-CAGgUGC-AUUGCGCUUCCAgC- -5' |
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16434 | 5' | -52.1 | NC_004084.1 | + | 50629 | 0.74 | 0.482434 |
Target: 5'- uCGACGGUCagaGCGUucuuuucaguGAUGCGAcucAGGUCGu -3' miRNA: 3'- -GUUGCCAGg--UGCA----------UUGCGCU---UCCAGC- -5' |
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16434 | 5' | -52.1 | NC_004084.1 | + | 35661 | 1.09 | 0.00252 |
Target: 5'- gCAACGGUCCACGUAACGCGAAGGUCGa -3' miRNA: 3'- -GUUGCCAGGUGCAUUGCGCUUCCAGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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