miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16435 3' -47 NC_004084.1 + 7604 0.66 0.994697
Target:  5'- cCGGCGcccgCGAACGGGuccAGGA-CGAUu -3'
miRNA:   3'- -GCUGUa---GCUUGCCCuuuUCCUaGUUG- -5'
16435 3' -47 NC_004084.1 + 1572 0.66 0.994697
Target:  5'- aGcCcgCGAACGGGuccAGGA-CGACg -3'
miRNA:   3'- gCuGuaGCUUGCCCuuuUCCUaGUUG- -5'
16435 3' -47 NC_004084.1 + 4808 0.66 0.994697
Target:  5'- gCGGCAgaGAagGCGGGcc--GGAUCGGCg -3'
miRNA:   3'- -GCUGUagCU--UGCCCuuuuCCUAGUUG- -5'
16435 3' -47 NC_004084.1 + 12457 0.66 0.994057
Target:  5'- cCGAuCGUCGAauuugaucucuggACGGGGAgguguggccucagacAucGGGAUCGACc -3'
miRNA:   3'- -GCU-GUAGCU-------------UGCCCUU---------------U--UCCUAGUUG- -5'
16435 3' -47 NC_004084.1 + 17171 0.66 0.993764
Target:  5'- gCGACGUCGAagGCGaGGG--AGGcacauugucGUCAGCc -3'
miRNA:   3'- -GCUGUAGCU--UGC-CCUuuUCC---------UAGUUG- -5'
16435 3' -47 NC_004084.1 + 39340 0.66 0.993764
Target:  5'- uCGACGUCGAcguagACGGccgcgcccuuacGGAuccGAGGGUCGAg -3'
miRNA:   3'- -GCUGUAGCU-----UGCC------------CUU---UUCCUAGUUg -5'
16435 3' -47 NC_004084.1 + 22820 0.66 0.993764
Target:  5'- gGAgAUCGGGcCGGGu-GAGGcguucGUCGACg -3'
miRNA:   3'- gCUgUAGCUU-GCCCuuUUCC-----UAGUUG- -5'
16435 3' -47 NC_004084.1 + 4950 0.66 0.993664
Target:  5'- aUGACGUCcgcCGGGAGAcgacgacccacgaGGaGAUCGGCg -3'
miRNA:   3'- -GCUGUAGcuuGCCCUUU-------------UC-CUAGUUG- -5'
16435 3' -47 NC_004084.1 + 36164 0.66 0.992704
Target:  5'- uCGACGUCGAcgucCGGGuuGAGuaacUCGGCg -3'
miRNA:   3'- -GCUGUAGCUu---GCCCuuUUCcu--AGUUG- -5'
16435 3' -47 NC_004084.1 + 7464 0.66 0.992704
Target:  5'- aCGGCGacUCGAGCGGcGAcggcGAAGGcgagacgagcaaGUCGGCc -3'
miRNA:   3'- -GCUGU--AGCUUGCC-CU----UUUCC------------UAGUUG- -5'
16435 3' -47 NC_004084.1 + 57600 0.66 0.991505
Target:  5'- cCGuC-UCGAACGGGuuGAGGAguUCGc- -3'
miRNA:   3'- -GCuGuAGCUUGCCCuuUUCCU--AGUug -5'
16435 3' -47 NC_004084.1 + 10965 0.66 0.991505
Target:  5'- uCGACAUCGAccauucCGGGucgAAucGGAUCGu- -3'
miRNA:   3'- -GCUGUAGCUu-----GCCC---UUuuCCUAGUug -5'
16435 3' -47 NC_004084.1 + 47961 0.66 0.991505
Target:  5'- aCGACGuugguccgcUCGAguacuucuGCGGGAugcacGAGGAcgUCGACu -3'
miRNA:   3'- -GCUGU---------AGCU--------UGCCCUu----UUCCU--AGUUG- -5'
16435 3' -47 NC_004084.1 + 41781 0.66 0.991505
Target:  5'- aCGACGUCGAcgACGaGGGcgucacGAUCGACc -3'
miRNA:   3'- -GCUGUAGCU--UGC-CCUuuuc--CUAGUUG- -5'
16435 3' -47 NC_004084.1 + 43689 0.66 0.991505
Target:  5'- -uGCGaCGGACGGGcgcgucgacGAAGuGGAUCAGCu -3'
miRNA:   3'- gcUGUaGCUUGCCC---------UUUU-CCUAGUUG- -5'
16435 3' -47 NC_004084.1 + 38373 0.66 0.991377
Target:  5'- cCGG-AUCGAgcGCGGGAAggcgaccGAGGAcCAACc -3'
miRNA:   3'- -GCUgUAGCU--UGCCCUU-------UUCCUaGUUG- -5'
16435 3' -47 NC_004084.1 + 30413 0.66 0.991377
Target:  5'- cCGACGUCGAcggGCGGcGAcggaagcgauggcGAGGA-CGACg -3'
miRNA:   3'- -GCUGUAGCU---UGCCcUU-------------UUCCUaGUUG- -5'
16435 3' -47 NC_004084.1 + 46503 0.67 0.990156
Target:  5'- cCGAUGccUUGAACGGGAAccugaacgagaGGGGGUUGAUc -3'
miRNA:   3'- -GCUGU--AGCUUGCCCUU-----------UUCCUAGUUG- -5'
16435 3' -47 NC_004084.1 + 21082 0.67 0.990156
Target:  5'- gGGCGUCGu-CGGGAucgccGAAGcGuUCAGCg -3'
miRNA:   3'- gCUGUAGCuuGCCCU-----UUUC-CuAGUUG- -5'
16435 3' -47 NC_004084.1 + 27804 0.67 0.986957
Target:  5'- uGAUcgCGAAgGGGAu--GGAcaUCGACc -3'
miRNA:   3'- gCUGuaGCUUgCCCUuuuCCU--AGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.