miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16435 5' -54 NC_004084.1 + 21233 0.66 0.854259
Target:  5'- cCCGUcgUCGGUCUUCUCGaugaugUCGaacgccccgagcucGUCGCGa -3'
miRNA:   3'- -GGCA--AGCUAGGAGAGCg-----AGC--------------CAGUGC- -5'
16435 5' -54 NC_004084.1 + 44608 0.66 0.8399
Target:  5'- gCCGagUGggCCgaUCGcCUCGGUCGCGa -3'
miRNA:   3'- -GGCaaGCuaGGagAGC-GAGCCAGUGC- -5'
16435 5' -54 NC_004084.1 + 44960 0.66 0.831166
Target:  5'- cCCGaUCuGGUCCgcggUUCGCa-GGUCACGc -3'
miRNA:   3'- -GGCaAG-CUAGGa---GAGCGagCCAGUGC- -5'
16435 5' -54 NC_004084.1 + 36820 0.66 0.831166
Target:  5'- cCCGagaCGGUCCagcugCUCGC-CGGUUGCa -3'
miRNA:   3'- -GGCaa-GCUAGGa----GAGCGaGCCAGUGc -5'
16435 5' -54 NC_004084.1 + 38426 0.66 0.82223
Target:  5'- cCCGUUCGAUga--UCGCUgGGUCGg- -3'
miRNA:   3'- -GGCAAGCUAggagAGCGAgCCAGUgc -5'
16435 5' -54 NC_004084.1 + 35780 0.66 0.8186
Target:  5'- -gGUUCGAgCCggaggCgccgggaaggacgCGCUCGGUCAUGa -3'
miRNA:   3'- ggCAAGCUaGGa----Ga------------GCGAGCCAGUGC- -5'
16435 5' -54 NC_004084.1 + 30546 0.67 0.8131
Target:  5'- gCUGUUCGucgacacgaacAUCCUCaUCGCggcgaCGGUCgGCGa -3'
miRNA:   3'- -GGCAAGC-----------UAGGAG-AGCGa----GCCAG-UGC- -5'
16435 5' -54 NC_004084.1 + 45459 0.67 0.8131
Target:  5'- cCCccUCGAguUCUUCUgGCguaucgUCGGUCACGa -3'
miRNA:   3'- -GGcaAGCU--AGGAGAgCG------AGCCAGUGC- -5'
16435 5' -54 NC_004084.1 + 49675 0.67 0.794298
Target:  5'- gCCGggUGGUCCg-UCGuCUCGGUguCGg -3'
miRNA:   3'- -GGCaaGCUAGGagAGC-GAGCCAguGC- -5'
16435 5' -54 NC_004084.1 + 46473 0.67 0.794298
Target:  5'- aCGUcagcUCGAUCgagucCUCGCU-GGUCGCGa -3'
miRNA:   3'- gGCA----AGCUAGga---GAGCGAgCCAGUGC- -5'
16435 5' -54 NC_004084.1 + 10692 0.67 0.794298
Target:  5'- aCCGUUCGGguagCCggugcucgguUCuUCGCUCGGcUCGgGg -3'
miRNA:   3'- -GGCAAGCUa---GG----------AG-AGCGAGCC-AGUgC- -5'
16435 5' -54 NC_004084.1 + 1435 0.67 0.784647
Target:  5'- gCCGUccUCGGccgCCUCcuUCGCUCGGaccgcuUCGCu -3'
miRNA:   3'- -GGCA--AGCUa--GGAG--AGCGAGCC------AGUGc -5'
16435 5' -54 NC_004084.1 + 47571 0.67 0.774843
Target:  5'- gCCGUUCGAggaCgUUCGCgagcgCGGUgGCGa -3'
miRNA:   3'- -GGCAAGCUag-GaGAGCGa----GCCAgUGC- -5'
16435 5' -54 NC_004084.1 + 32407 0.69 0.692181
Target:  5'- gCGUUCGGUCCcgUCgacgaGCUCGcacucGUCGCGa -3'
miRNA:   3'- gGCAAGCUAGG--AGag---CGAGC-----CAGUGC- -5'
16435 5' -54 NC_004084.1 + 2605 0.69 0.681483
Target:  5'- uCCGggUCGAccgauUCCUCUCGUUcCGGUguUGg -3'
miRNA:   3'- -GGCa-AGCU-----AGGAGAGCGA-GCCAguGC- -5'
16435 5' -54 NC_004084.1 + 7266 0.69 0.659962
Target:  5'- aCCGUcUCGAUcgCCUcCUCGUUCGGgaUCGCc -3'
miRNA:   3'- -GGCA-AGCUA--GGA-GAGCGAGCC--AGUGc -5'
16435 5' -54 NC_004084.1 + 25793 0.7 0.649158
Target:  5'- aCCGUcUCG-UCCUCcgcaUCGCUggaguauggaaCGGUCGCGu -3'
miRNA:   3'- -GGCA-AGCuAGGAG----AGCGA-----------GCCAGUGC- -5'
16435 5' -54 NC_004084.1 + 11280 0.71 0.562962
Target:  5'- -gGUaCGAgugccCCUCUCGCUCGGcgUCGCa -3'
miRNA:   3'- ggCAaGCUa----GGAGAGCGAGCC--AGUGc -5'
16435 5' -54 NC_004084.1 + 36392 1.12 0.001169
Target:  5'- aCCGUUCGAUCCUCUCGCUCGGUCACGg -3'
miRNA:   3'- -GGCAAGCUAGGAGAGCGAGCCAGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.