miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16436 5' -60.2 NC_004084.1 + 43154 0.66 0.471244
Target:  5'- uUGCCGCCGccUCCUCcUGGAAUCa-- -3'
miRNA:   3'- uACGGCGGCu-AGGGGcACCUUGGcag -5'
16436 5' -60.2 NC_004084.1 + 35149 0.66 0.442433
Target:  5'- -gGCCGCuCGGUCUCCagaccGAACCGUUc -3'
miRNA:   3'- uaCGGCG-GCUAGGGGcac--CUUGGCAG- -5'
16436 5' -60.2 NC_004084.1 + 21761 0.67 0.423789
Target:  5'- gAUGCUGCCGAUgUcgagaUCGaGGAGCCGUa -3'
miRNA:   3'- -UACGGCGGCUAgG-----GGCaCCUUGGCAg -5'
16436 5' -60.2 NC_004084.1 + 56710 0.67 0.405623
Target:  5'- -aGCCGCC-AUCCuCCGcUGGGACucggaCGUCc -3'
miRNA:   3'- uaCGGCGGcUAGG-GGC-ACCUUG-----GCAG- -5'
16436 5' -60.2 NC_004084.1 + 50960 0.67 0.40027
Target:  5'- -cGCCGCuCGAgUCgCCGUcGGAcuccgaggucucgccACCGUCg -3'
miRNA:   3'- uaCGGCG-GCU-AGgGGCA-CCU---------------UGGCAG- -5'
16436 5' -60.2 NC_004084.1 + 40061 0.67 0.387955
Target:  5'- -aGCCGUCGA-CCCCGcgaacgucGGGAUgGUCg -3'
miRNA:   3'- uaCGGCGGCUaGGGGCa-------CCUUGgCAG- -5'
16436 5' -60.2 NC_004084.1 + 14871 0.68 0.338075
Target:  5'- -gGCCGCCGGUCUcggugCCGUGcu-UCGUCa -3'
miRNA:   3'- uaCGGCGGCUAGG-----GGCACcuuGGCAG- -5'
16436 5' -60.2 NC_004084.1 + 54572 0.69 0.293025
Target:  5'- --aCCGa-GGUUCCgGUGGAGCCGUCg -3'
miRNA:   3'- uacGGCggCUAGGGgCACCUUGGCAG- -5'
16436 5' -60.2 NC_004084.1 + 22473 0.69 0.290899
Target:  5'- -gGCCGCCGA-CCCCGgcgacgccgGGGACaugcucgugaaccgCGUCa -3'
miRNA:   3'- uaCGGCGGCUaGGGGCa--------CCUUG--------------GCAG- -5'
16436 5' -60.2 NC_004084.1 + 53449 0.7 0.2528
Target:  5'- --cCCGCCGAucUCCUCGUGGGucgUCGUCu -3'
miRNA:   3'- uacGGCGGCU--AGGGGCACCUu--GGCAG- -5'
16436 5' -60.2 NC_004084.1 + 5846 0.72 0.206361
Target:  5'- -cGCCGCCGcaGUCCUCGUGGAucuUCG-Cg -3'
miRNA:   3'- uaCGGCGGC--UAGGGGCACCUu--GGCaG- -5'
16436 5' -60.2 NC_004084.1 + 36658 1.06 0.000557
Target:  5'- gAUGCCGCCGAUCCCCGUGGAACCGUCc -3'
miRNA:   3'- -UACGGCGGCUAGGGGCACCUUGGCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.