Results 1 - 19 of 19 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16439 | 3' | -45.9 | NC_004084.1 | + | 23415 | 0.66 | 0.997499 |
Target: 5'- aCUCGAGcCCagcugAUCGcuGACACGCAg- -3' miRNA: 3'- aGAGUUCuGGaa---UAGU--UUGUGCGUgu -5' |
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16439 | 3' | -45.9 | NC_004084.1 | + | 25860 | 0.66 | 0.996978 |
Target: 5'- -aUCGAGACaccgUUGUucCAGGCGCGCugAa -3' miRNA: 3'- agAGUUCUGg---AAUA--GUUUGUGCGugU- -5' |
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16439 | 3' | -45.9 | NC_004084.1 | + | 15126 | 0.66 | 0.997499 |
Target: 5'- aCUCAGGGCCgcgaagCuAGCGgGUACAg -3' miRNA: 3'- aGAGUUCUGGaaua--GuUUGUgCGUGU- -5' |
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16439 | 3' | -45.9 | NC_004084.1 | + | 28004 | 0.66 | 0.996978 |
Target: 5'- gUCUCGAGGCCggggUAUUcgucgucgaaAAGCcCGUGCAg -3' miRNA: 3'- -AGAGUUCUGGa---AUAG----------UUUGuGCGUGU- -5' |
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16439 | 3' | -45.9 | NC_004084.1 | + | 53014 | 0.66 | 0.995434 |
Target: 5'- --aCGAGACCUacuggAUCGAgcggaagaaguccgGCugGCACGg -3' miRNA: 3'- agaGUUCUGGAa----UAGUU--------------UGugCGUGU- -5' |
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16439 | 3' | -45.9 | NC_004084.1 | + | 53535 | 0.67 | 0.993922 |
Target: 5'- uUCUCGccucACCUUAUCAAACAucuaacccgguaUGCACc -3' miRNA: 3'- -AGAGUuc--UGGAAUAGUUUGU------------GCGUGu -5' |
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16439 | 3' | -45.9 | NC_004084.1 | + | 57402 | 0.67 | 0.992859 |
Target: 5'- aCUCGAGucCCgcgAUCAggUACGC-CAg -3' miRNA: 3'- aGAGUUCu-GGaa-UAGUuuGUGCGuGU- -5' |
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16439 | 3' | -45.9 | NC_004084.1 | + | 39841 | 0.67 | 0.988761 |
Target: 5'- gCUCGAGuccaucggcgGCCgcggcgccGUCGAGCACGCugAg -3' miRNA: 3'- aGAGUUC----------UGGaa------UAGUUUGUGCGugU- -5' |
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16439 | 3' | -45.9 | NC_004084.1 | + | 51165 | 0.67 | 0.992859 |
Target: 5'- -aUCGAGACg--GUCGccgAGCACGCGCc -3' miRNA: 3'- agAGUUCUGgaaUAGU---UUGUGCGUGu -5' |
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16439 | 3' | -45.9 | NC_004084.1 | + | 51417 | 0.69 | 0.972278 |
Target: 5'- -gUCGAGGCCU--UCGagggcGACACGCugAu -3' miRNA: 3'- agAGUUCUGGAauAGU-----UUGUGCGugU- -5' |
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16439 | 3' | -45.9 | NC_004084.1 | + | 1046 | 0.69 | 0.972278 |
Target: 5'- gCUCGAGuucGCCgagGUCGAACAgccacucguCGCGCAu -3' miRNA: 3'- aGAGUUC---UGGaa-UAGUUUGU---------GCGUGU- -5' |
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16439 | 3' | -45.9 | NC_004084.1 | + | 12718 | 0.69 | 0.968955 |
Target: 5'- cCUCGAGGaguugCUUGUCuc-CGCGCACGa -3' miRNA: 3'- aGAGUUCUg----GAAUAGuuuGUGCGUGU- -5' |
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16439 | 3' | -45.9 | NC_004084.1 | + | 10820 | 0.7 | 0.961477 |
Target: 5'- cCUCGAGAUCUUGUgAGAguCGC-CAc -3' miRNA: 3'- aGAGUUCUGGAAUAgUUUguGCGuGU- -5' |
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16439 | 3' | -45.9 | NC_004084.1 | + | 33541 | 0.71 | 0.925211 |
Target: 5'- uUCUggCAuGACCUUAUCAAACguuuagaGCGCAUg -3' miRNA: 3'- -AGA--GUuCUGGAAUAGUUUG-------UGCGUGu -5' |
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16439 | 3' | -45.9 | NC_004084.1 | + | 28396 | 0.71 | 0.919482 |
Target: 5'- --gCGAGACCUcgAUCG-GCGCGUACAa -3' miRNA: 3'- agaGUUCUGGAa-UAGUuUGUGCGUGU- -5' |
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16439 | 3' | -45.9 | NC_004084.1 | + | 4842 | 0.72 | 0.883035 |
Target: 5'- -gUCAuGACCUUAUCAAACAuuagagggUGCAUAc -3' miRNA: 3'- agAGUuCUGGAAUAGUUUGU--------GCGUGU- -5' |
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16439 | 3' | -45.9 | NC_004084.1 | + | 24832 | 0.74 | 0.808865 |
Target: 5'- aCUCAcuacGACCUUAUCAaacagauuuauuaGACAUGCGCu -3' miRNA: 3'- aGAGUu---CUGGAAUAGU-------------UUGUGCGUGu -5' |
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16439 | 3' | -45.9 | NC_004084.1 | + | 26611 | 0.83 | 0.349513 |
Target: 5'- gCUCGgcAGACCUUAUCAAACAcucuaauCGCACAc -3' miRNA: 3'- aGAGU--UCUGGAAUAGUUUGU-------GCGUGU- -5' |
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16439 | 3' | -45.9 | NC_004084.1 | + | 37610 | 1.1 | 0.008041 |
Target: 5'- cUCUCAAGACCUUAUCAAACACGCACAc -3' miRNA: 3'- -AGAGUUCUGGAAUAGUUUGUGCGUGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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